Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 4.7e-126 454.5 229 100.0
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 3.2e-45 186.0 231 48.1
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 1.7e-35 153.7 236 44.9
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 6.8e-32 141.7 212 46.2
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 2.6e-31 139.8 248 40.3
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 1.6e-28 130.6 220 41.8
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 2.1e-28 130.2 215 40.9
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 6.0e-28 128.6 234 39.7
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 1.0e-27 127.9 217 36.9
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 9.5e-26 121.3 244 38.9
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 1.4e-24 117.5 199 43.2
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 1.4e-24 117.5 213 41.3
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 3.4e-23 112.8 230 37.8
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 5.8e-23 112.1 231 37.2
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 1.3e-22 110.9 168 42.9
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 1.3e-22 110.9 168 42.9
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 1.3e-22 110.9 195 39.0
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 1.7e-22 110.5 192 38.5
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 2.2e-22 110.2 216 42.1
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 6.4e-22 108.6 211 37.4
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 6.4e-22 108.6 196 38.3
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 1.1e-21 107.8 193 39.4
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 4.1e-21 105.9 220 35.9
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 4.1e-21 105.9 210 35.2
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 2.1e-20 103.6 207 35.7
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 2.7e-20 103.2 190 41.1
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 2.7e-20 103.2 202 37.6
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 1.3e-19 100.9 201 38.8
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 1.3e-19 100.9 196 38.3
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 8.6e-19 98.2 147 38.1
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 8.6e-19 98.2 195 36.9
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 8.6e-19 98.2 184 38.6
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 1.1e-18 97.8 199 37.2
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 1.9e-18 97.1 199 37.7
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 1.9e-18 97.1 227 35.7
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 3.3e-18 96.3 201 37.8
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 7.3e-18 95.1 222 32.9
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 9.6e-18 94.7 235 31.5
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 1.6e-17 94.0 197 36.5
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 6.2e-17 92.0 201 33.8
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 6.2e-17 92.0 201 33.8
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 1.8e-16 90.5 207 34.3
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 2.4e-16 90.1 222 36.0
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.1e-16 89.7 200 36.0
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 3.1e-16 89.7 207 36.2
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 4.0e-16 89.4 148 41.2
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 4.0e-16 89.4 158 37.3
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 6.8e-16 88.6 222 35.6
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 6.8e-16 88.6 210 35.2
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 2.0e-15 87.0 162 42.0
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 2.0e-15 87.0 158 37.3
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 2.6e-15 86.7 145 42.1
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 2.6e-15 86.7 149 39.6
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.4e-15 86.3 198 34.8
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 4.4e-15 85.9 198 34.8
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 1.3e-14 84.3 196 32.7
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 1.7e-14 84.0 203 32.5
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 2.2e-14 83.6 150 39.3
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 2.2e-14 83.6 197 29.9
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 2.9e-14 83.2 196 32.7
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 2.9e-14 83.2 197 36.5
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 6.4e-14 82.0 201 33.3
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 1.1e-13 81.3 172 39.0
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 1.2e-12 77.8 191 34.6
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 3.5e-12 76.3 197 35.0
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 4.6e-12 75.9 152 34.9
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 1.3e-11 74.3 151 41.1
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 2.3e-11 73.6 181 32.6
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.9e-11 72.8 135 36.3
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 8.7e-11 71.6 201 31.3
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 5.6e-10 68.9 200 31.5
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 7.3e-10 68.6 142 34.5
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 9.6e-10 68.2 197 32.0
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 9.6e-10 68.2 192 32.3
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 4.8e-09 65.9 197 31.0
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 1.4e-08 64.3 140 35.0
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.8e-08 63.9 200 32.0
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 5.3e-08 62.4 120 35.8
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 1.2e-07 61.2 212 29.2
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 1.5e-07 60.8 259 28.2
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 2.0e-07 60.5 195 30.8
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 2.0e-07 60.5 146 31.5
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.6e-07 60.1 144 31.9
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 5.8e-07 58.9 218 25.7
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.3e-06 57.8 130 34.6
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.7e-06 57.4 168 29.2
Ca_18907_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 8.4e-06 55.1 108 40.7


User provided reference genes

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