Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 7.9e-213 743.4 354 100.0
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 1.4e-161 573.2 336 78.0
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 1.7e-159 566.2 328 79.3
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 1.2e-157 560.1 320 79.7
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 1.6e-157 559.7 311 81.0
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 4.7e-157 558.1 318 80.5
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 5.2e-156 554.7 310 80.6
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 8.9e-156 553.9 321 78.8
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 5.8e-155 551.2 318 78.9
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 5.8e-155 551.2 320 79.1
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 7.5e-155 550.8 318 79.2
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 6.4e-154 547.7 319 78.4
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 8.3e-154 547.4 309 80.9
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.1e-153 547.0 316 78.5
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 1.9e-153 546.2 331 76.4
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 1.9e-153 546.2 313 79.9
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 2.4e-153 545.8 321 76.9
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 3.2e-153 545.4 336 74.4
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 4.1e-153 545.0 310 79.4
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 7.0e-153 544.3 319 76.8
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.2e-152 543.5 313 79.2
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 1.6e-152 543.1 330 76.7
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 1.6e-152 543.1 330 76.7
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 1.6e-152 543.1 319 78.4
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 4.6e-152 541.6 350 70.9
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 3.0e-151 538.9 351 71.5
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 5.0e-151 538.1 323 75.9
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 1.5e-150 536.6 309 79.0
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 3.3e-150 535.4 331 73.7
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 4.3e-150 535.0 322 75.8
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 9.5e-150 533.9 314 77.4
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 1.2e-149 533.5 323 75.5
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.6e-149 533.1 315 77.1
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 2.8e-149 532.3 319 75.5
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 2.8e-149 532.3 337 73.0
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 2.8e-149 532.3 310 78.1
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 4.7e-149 531.6 308 78.9
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.7e-149 531.6 310 77.7
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 6.2e-149 531.2 327 76.5
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 6.2e-149 531.2 305 78.7
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 6.2e-149 531.2 309 77.3
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 8.1e-149 530.8 309 77.3
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 1.1e-148 530.4 327 74.0
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.1e-148 530.4 312 76.6
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 1.4e-148 530.0 327 76.5
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 1.4e-148 530.0 311 77.5
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 1.8e-148 529.6 312 76.9
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.8e-148 529.6 316 77.2
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 1.8e-148 529.6 316 75.6
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.3e-148 529.3 321 75.1
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 2.3e-148 529.3 311 77.8
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 3.1e-148 528.9 312 77.9
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 3.1e-148 528.9 335 72.8
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.2e-148 528.1 321 74.8
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 1.2e-147 526.9 312 77.9
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 1.5e-147 526.6 305 78.0
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 2.0e-147 526.2 312 77.2
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 5.8e-147 524.6 321 74.8
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.8e-147 524.6 350 70.0
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 5.8e-147 524.6 316 75.0
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 5.8e-147 524.6 309 77.7
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 9.9e-147 523.9 316 76.3
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.3e-146 523.5 331 72.8
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 3.7e-146 521.9 310 75.5
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 4.9e-146 521.5 312 76.0
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 4.9e-146 521.5 312 76.3
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 8.3e-146 520.8 312 76.0
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 1.1e-145 520.4 310 76.8
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 1.1e-145 520.4 312 76.6
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 1.1e-145 520.4 347 70.9
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 3.2e-145 518.8 320 73.4
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 3.2e-145 518.8 332 72.3
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 3.2e-145 518.8 321 75.1
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 7.1e-145 517.7 307 76.2
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 9.2e-145 517.3 328 72.3
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 1.2e-144 516.9 307 74.9
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 6.0e-144 514.6 309 75.1
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 1.0e-143 513.8 308 75.0
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 1.3e-143 513.5 309 73.5
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 5.1e-143 511.5 330 70.6
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 6.6e-143 511.1 309 76.7
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 2.5e-142 509.2 344 69.2
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 3.3e-142 508.8 347 68.3
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 3.3e-142 508.8 350 67.7
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 5.6e-142 508.1 347 68.6
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 2.1e-141 506.1 309 72.8
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.1e-141 506.1 316 73.4
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 2.8e-141 505.8 348 68.4
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 4.7e-141 505.0 329 70.8
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 1.4e-140 503.4 309 73.5
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.4e-140 503.4 307 73.6
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 2.4e-140 502.7 315 72.4
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 3.1e-140 502.3 314 74.2
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.5e-139 500.0 310 74.5
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 6.4e-138 494.6 327 68.8
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.1e-137 493.8 310 73.5
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 7.1e-137 491.1 315 73.7
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 2.1e-136 489.6 304 73.4
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 4.3e-134 481.9 312 73.1
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 3.1e-132 475.7 355 64.2
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 4.4e-131 471.9 309 67.3
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.6e-128 461.8 319 68.7
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 6.6e-127 458.0 320 68.4
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 2.5e-126 456.1 315 69.5
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 2.1e-125 453.0 309 69.6
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 3.6e-125 452.2 366 61.5
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 6.2e-125 451.4 315 67.3
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.4e-124 450.3 348 63.5
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 2.0e-123 446.4 314 64.6
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 3.4e-123 445.7 303 65.3
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 4.5e-123 445.3 274 72.6
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 1.1e-121 440.7 290 66.9
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 4.2e-121 438.7 307 68.1
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 3.9e-119 432.2 308 63.0
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 1.9e-118 429.9 303 63.4
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 4.9e-114 415.2 307 60.3
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 4.2e-113 412.1 256 71.5
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 6.0e-112 408.3 450 49.1
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.8e-108 396.7 309 59.9
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 5.3e-100 368.6 207 82.6
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 1.8e-95 353.6 211 74.4
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 1.8e-92 343.6 201 76.1
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 3.1e-92 342.8 254 65.0
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.4e-89 334.0 214 73.4
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 7.7e-83 311.6 182 77.5
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 3.8e-82 309.3 176 76.7
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 2.3e-79 300.1 184 73.4
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 1.1e-78 297.7 303 47.5
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 8.8e-71 271.6 314 47.8
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 3.3e-49 199.9 211 46.9
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.3e-42 177.9 117 63.2
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 8.0e-40 168.7 100 78.0
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 3.9e-34 149.8 87 75.9
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.6e-32 143.3 94 68.1
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.5e-30 137.9 78 73.1
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.1e-28 129.0 73 76.7
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 5.1e-26 122.9 79 75.9
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.3e-25 120.2 91 59.3
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 4.3e-25 119.8 305 30.2
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 5.6e-25 119.4 309 29.8
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 1.2e-19 101.7 84 65.5
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.1e-15 88.6 184 29.9
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 6.4e-13 79.3 315 26.7
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.0e-10 70.5 49 67.3
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 3.0e-10 70.5 44 65.9
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.6e-08 63.5 48 56.2
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.2e-06 58.5 43 67.4


User provided reference genes

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