Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 5.9e-163 577.8 366 100.0
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 2.2e-80 303.5 247 64.4
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.4e-79 300.1 248 61.7
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 4.1e-79 299.3 244 64.8
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 7.0e-79 298.5 247 63.2
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 1.6e-78 297.4 247 67.2
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.6e-78 297.4 247 63.2
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.6e-78 297.4 247 63.2
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.5e-78 296.2 247 62.8
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 5.9e-78 295.4 247 62.8
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 3.8e-77 292.7 244 62.3
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 1.1e-76 291.2 321 53.3
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.1e-76 291.2 223 64.6
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 1.5e-76 290.8 244 61.9
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 3.2e-76 289.7 321 53.3
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 3.2e-76 289.7 247 61.9
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 3.2e-76 289.7 324 52.5
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 4.2e-76 289.3 318 54.7
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 5.5e-76 288.9 246 62.2
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 5.5e-76 288.9 284 58.1
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.2e-75 287.7 244 62.3
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 6.1e-75 285.4 323 53.3
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 8.0e-75 285.0 322 53.7
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 8.0e-75 285.0 259 61.4
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 1.0e-74 284.6 245 61.2
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 1.0e-74 284.6 245 61.2
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 1.8e-74 283.9 318 52.5
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 2.3e-74 283.5 247 60.3
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 3.0e-74 283.1 244 61.5
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 3.0e-74 283.1 317 55.5
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 3.0e-74 283.1 249 59.8
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 4.0e-74 282.7 246 61.8
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 6.7e-74 282.0 336 51.2
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 6.7e-74 282.0 249 63.9
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 6.7e-74 282.0 331 50.5
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 1.5e-73 280.8 335 52.5
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 3.3e-73 279.6 320 53.1
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 9.7e-73 278.1 246 60.2
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.3e-72 277.7 247 61.5
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.3e-72 277.7 257 57.6
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 1.7e-72 277.3 323 51.4
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.7e-72 277.3 323 52.3
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.7e-72 277.3 326 51.2
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 2.8e-72 276.6 328 51.2
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 2.8e-72 276.6 328 51.2
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 2.8e-72 276.6 327 49.5
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 3.7e-72 276.2 328 51.5
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 3.7e-72 276.2 325 53.2
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 3.7e-72 276.2 244 60.2
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 4.8e-72 275.8 246 60.2
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 6.3e-72 275.4 330 50.6
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 6.3e-72 275.4 330 50.6
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 8.2e-72 275.0 318 52.5
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 1.1e-71 274.6 328 51.5
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.4e-71 274.2 322 52.8
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 1.8e-71 273.9 334 50.9
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 3.1e-71 273.1 326 51.2
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 3.1e-71 273.1 324 51.2
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 4.1e-71 272.7 323 49.5
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 7.0e-71 271.9 328 49.4
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.2e-70 271.2 334 50.9
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.6e-70 270.8 245 61.2
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 5.9e-70 268.9 264 56.8
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.9e-70 268.9 247 59.9
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 5.9e-70 268.9 329 49.2
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 7.7e-70 268.5 242 61.6
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.9e-69 266.5 327 50.2
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 3.8e-69 266.2 331 50.8
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 3.8e-69 266.2 330 50.0
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 5.0e-69 265.8 242 59.1
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 6.5e-69 265.4 219 65.8
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 8.5e-69 265.0 344 49.7
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 1.5e-68 264.2 252 57.5
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.9e-68 263.8 277 56.0
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 7.2e-68 261.9 255 56.1
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 2.1e-67 260.4 312 50.0
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 4.7e-67 259.2 287 54.4
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 8.0e-67 258.5 248 56.9
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 1.5e-65 254.2 283 50.5
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 2.6e-65 253.4 246 56.1
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 1.7e-64 250.8 246 55.7
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.2e-64 250.4 247 57.5
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 3.7e-64 249.6 277 52.0
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 4.8e-64 249.2 283 57.6
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 6.3e-64 248.8 336 48.2
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 8.3e-64 248.4 248 55.2
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.4e-63 247.7 249 55.0
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 5.4e-63 245.7 248 54.4
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 1.6e-62 244.2 248 54.0
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 1.6e-62 244.2 325 46.8
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 5.9e-62 242.3 325 47.1
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 7.7e-62 241.9 246 59.3
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 2.2e-61 240.4 214 62.1
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 6.5e-61 238.8 215 60.9
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.5e-60 237.7 237 54.9
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 5.5e-60 235.7 320 52.2
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.1e-59 233.8 262 58.0
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 2.1e-59 233.8 241 54.4
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 2.8e-59 233.4 214 62.1
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 1.0e-58 231.5 273 49.5
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 3.0e-58 229.9 322 49.1
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 4.9e-56 222.6 214 57.5
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 8.3e-56 221.9 239 59.8
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 3.1e-55 219.9 245 50.2
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 3.1e-55 219.9 252 49.2
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 5.4e-55 219.2 336 43.8
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 4.5e-54 216.1 227 55.5
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.9e-54 215.7 259 49.8
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 1.0e-53 214.9 243 51.0
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 1.0e-53 214.9 243 51.0
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 7.3e-52 208.8 246 50.8
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 7.3e-52 208.8 246 50.8
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 1.6e-51 207.6 246 50.8
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.8e-51 206.8 327 44.3
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.0e-50 204.9 213 55.9
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 9.8e-49 198.4 335 40.6
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 6.4e-48 195.7 249 46.2
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.4e-47 194.5 246 48.4
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 2.4e-47 193.7 186 59.1
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 7.0e-47 192.2 285 44.6
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 9.2e-47 191.8 200 55.5
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 1.0e-45 188.3 292 43.8
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 8.6e-45 185.3 337 40.9
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 3.6e-43 179.9 263 46.0
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 1.4e-39 167.9 234 44.4
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.4e-39 167.9 141 59.6
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.9e-31 141.0 145 53.1
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 9.2e-31 138.7 102 69.6
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 2.7e-30 137.1 214 44.4
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.1e-28 131.7 117 65.0
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 5.2e-26 122.9 168 42.9
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 2.6e-25 120.6 139 46.8
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 7.1e-23 112.5 179 36.9
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.6e-22 111.3 103 54.4
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.9e-21 106.7 120 45.8
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 9.6e-20 102.1 138 39.1
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.1e-18 97.1 126 41.3
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 2.0e-17 94.4 156 36.5
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 3.0e-13 80.5 42 76.2
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 1.8e-10 71.2 103 41.7
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 7.6e-09 65.9 34 76.5
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 4.9e-08 63.2 34 70.6
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 6.4e-08 62.8 39 64.1
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 8.4e-08 62.4 33 72.7
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 1.9e-07 61.2 33 72.7
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 3.2e-07 60.5 41 65.9
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 4.2e-07 60.1 92 51.1


User provided reference genes

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