Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 3.9e-81 304.7 146 100.0
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 6.4e-68 260.8 146 84.2
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.1e-67 260.0 146 83.6
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.4e-67 259.6 146 83.6
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 1.9e-67 259.2 146 83.6
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 7.1e-67 257.3 146 82.9
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 9.3e-67 256.9 146 81.5
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.6e-66 256.1 150 83.3
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.6e-66 256.1 146 81.5
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.6e-66 256.1 146 81.5
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 2.7e-66 255.4 146 82.9
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 2.7e-66 255.4 146 82.2
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 2.7e-66 255.4 146 80.8
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 4.6e-66 254.6 146 81.5
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 4.6e-66 254.6 146 80.8
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.7e-65 252.7 146 79.5
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 2.3e-65 252.3 146 80.8
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 2.3e-65 252.3 146 80.8
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 3.9e-65 251.5 146 80.8
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 6.6e-65 250.8 146 79.5
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.1e-64 250.0 146 80.1
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.5e-64 249.6 146 80.8
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 3.3e-64 248.4 146 77.4
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 5.6e-64 247.7 146 82.2
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 5.6e-64 247.7 146 82.2
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.6e-63 246.1 148 79.1
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 2.1e-63 245.7 147 80.3
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 2.8e-63 245.4 146 78.8
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 4.8e-63 244.6 146 80.1
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 4.8e-63 244.6 146 79.5
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 4.8e-63 244.6 147 78.9
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 6.2e-63 244.2 147 79.6
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 6.2e-63 244.2 146 79.5
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 76.7
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 1.1e-62 243.4 137 83.9
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.4e-62 243.0 151 78.8
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.4e-62 243.0 148 79.1
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 2.4e-62 242.3 147 78.2
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 78.1
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 5.3e-62 241.1 147 79.6
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 6.9e-62 240.7 146 77.4
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 6.9e-62 240.7 147 78.9
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 6.9e-62 240.7 147 78.9
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 2.0e-61 239.2 147 78.2
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 3.4e-61 238.4 146 75.3
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 76.0
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 5.8e-61 237.7 147 75.5
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 5.8e-61 237.7 147 75.5
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 9.9e-61 236.9 146 76.0
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.3e-60 236.5 147 78.2
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 1.3e-60 236.5 148 77.0
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 1.7e-60 236.1 148 78.4
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 2.2e-60 235.7 146 74.0
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 2.2e-60 235.7 146 76.7
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 2.2e-60 235.7 147 74.8
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 2.9e-60 235.3 146 77.4
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 3.8e-60 235.0 146 74.7
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 4.9e-60 234.6 146 76.7
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 4.9e-60 234.6 146 76.0
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 4.9e-60 234.6 146 73.3
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 6.4e-60 234.2 146 76.0
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 8.4e-60 233.8 150 77.3
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 8.4e-60 233.8 140 78.6
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 8.4e-60 233.8 147 75.5
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 8.4e-60 233.8 146 74.7
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-59 233.4 146 75.3
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.1e-59 233.4 146 76.0
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.4e-59 233.0 147 76.9
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 1.9e-59 232.6 148 77.7
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.9e-59 232.6 147 75.5
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.9e-59 232.6 146 75.3
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.4e-59 232.3 146 72.6
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.4e-59 232.3 146 72.6
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 2.4e-59 232.3 146 76.0
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.2e-59 231.9 146 73.3
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 3.2e-59 231.9 148 76.4
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 4.2e-59 231.5 146 72.6
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 5.4e-59 231.1 146 72.6
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 5.4e-59 231.1 148 74.3
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 5.4e-59 231.1 149 75.8
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 5.4e-59 231.1 143 72.7
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 74.0
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 75.3
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 2.1e-58 229.2 146 71.2
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.1e-58 229.2 146 74.0
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 2.7e-58 228.8 147 72.1
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 3.5e-58 228.4 147 73.5
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 4.6e-58 228.0 146 72.6
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 6.0e-58 227.6 144 72.2
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 7.9e-58 227.3 146 73.3
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 7.9e-58 227.3 147 72.8
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 7.9e-58 227.3 150 76.0
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 7.9e-58 227.3 146 76.0
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.3e-57 226.5 146 75.3
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 2.3e-57 225.7 149 75.2
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 3.0e-57 225.3 149 73.8
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 3.9e-57 224.9 150 74.7
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 5.1e-57 224.6 144 72.9
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 5.1e-57 224.6 148 74.3
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 8.7e-57 223.8 132 79.5
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 8.7e-57 223.8 132 79.5
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.9e-56 222.6 146 71.2
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.3e-56 221.9 147 73.5
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 4.3e-56 221.5 150 75.3
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 5.6e-56 221.1 148 74.3
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 7.4e-56 220.7 146 68.5
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.6e-56 220.3 132 78.8
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.6e-55 219.5 130 80.0
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.7e-55 218.4 146 67.1
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 3.7e-55 218.4 147 75.5
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 3.7e-55 218.4 133 78.2
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 4.8e-55 218.0 131 75.6
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.8e-55 218.0 140 71.4
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.8e-54 216.1 150 74.0
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 1.8e-54 216.1 146 69.9
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 2.4e-54 215.7 146 66.4
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 2.4e-54 215.7 150 71.3
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 2.4e-54 215.7 147 72.1
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 2.4e-54 215.7 147 72.1
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 3.1e-54 215.3 147 72.8
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 3.1e-54 215.3 147 72.8
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 6.9e-54 214.2 146 68.5
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 9.0e-54 213.8 125 77.6
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 2.2e-52 209.1 150 69.3
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 2.2e-52 209.1 150 69.3
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 2.2e-52 209.1 150 69.3
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 6.4e-52 207.6 150 69.3
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 6.4e-52 207.6 150 68.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 6.4e-52 207.6 150 68.0
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.1e-51 206.8 151 67.5
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 1.4e-51 206.5 150 68.7
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 1.9e-51 206.1 150 68.7
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 2.4e-51 205.7 130 76.2
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 4.2e-51 204.9 116 81.0
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 5.5e-51 204.5 147 67.3
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 6.0e-50 201.1 146 65.8
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.8e-49 199.5 148 68.2
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.8e-49 199.5 148 68.2
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.8e-49 199.5 148 68.2
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.3e-47 193.4 123 72.4
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 3.7e-47 191.8 146 63.7
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 2.6e-45 185.7 134 68.7
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 7.6e-45 184.1 146 65.8
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.5e-40 169.9 146 62.3
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 8.2e-39 164.1 101 76.2
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.7e-36 156.4 101 73.3
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 1.1e-35 153.7 146 59.6
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.5e-35 152.5 97 78.4
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.7e-31 139.8 148 51.4
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 3.7e-31 138.7 129 54.3
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 5.9e-29 131.3 76 88.2
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 9.4e-27 124.0 68 88.2
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 4.7e-26 121.7 126 55.6
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 1.1e-22 110.5 166 40.4
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 1.1e-16 90.5 90 47.8
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 6.1e-10 68.2 98 33.7
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 1.5e-08 63.5 37 70.3
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 2.2e-07 59.7 69 40.6
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 3.1e-06 55.8 42 66.7


User provided reference genes

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