Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014465 Daucus carota HOM05D004735 ORTHO05D005243 0.0e+00 1647.5 841 100.0
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 8.5e-181 638.3 943 42.4
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 2.6e-169 600.1 932 41.6
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 9.8e-161 571.6 935 40.5
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 1.1e-159 568.2 921 40.0
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 3.9e-149 533.1 922 37.9
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 1.4e-143 514.6 952 37.4
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 4.6e-142 509.6 913 38.2
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 1.2e-139 501.5 913 37.3
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 1.6e-134 484.6 970 35.8
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 3.5e-134 483.4 953 36.1
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 1.7e-133 481.1 777 41.1
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 2.3e-133 480.7 913 37.3
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 2.1e-131 474.2 952 35.1
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 4.7e-131 473.0 1013 33.7
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 1.1e-130 471.9 915 35.7
Dinv33275 Davidia involucrata HOM05D004735 ORTHO05D005243 1.2e-129 468.4 698 42.0
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 3.4e-129 466.8 933 36.9
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 3.8e-128 463.4 912 36.5
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 3.8e-128 463.4 969 35.7
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 7.8e-126 455.7 953 36.9
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 2.3e-125 454.1 913 36.5
Lj7A617T74 Lonicera japonica HOM05D004735 ORTHO05D005243 6.6e-125 452.6 702 41.2
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 6.6e-125 452.6 917 35.4
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 8.7e-125 452.2 914 36.5
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 1.1e-124 451.8 924 35.1
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 1.5e-124 451.4 928 37.2
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 8.1e-123 445.7 926 36.4
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.4e-122 444.9 912 36.2
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 9.0e-122 442.2 918 35.4
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 2.9e-120 437.2 926 35.1
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.2e-118 431.8 917 34.2
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 1.0e-117 428.7 911 35.6
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 2.3e-117 427.6 959 34.5
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 3.0e-117 427.2 1030 31.4
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 3.9e-117 426.8 945 35.2
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 2.5e-116 424.1 1002 32.4
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 3.3e-116 423.7 930 34.0
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 5.6e-116 422.9 936 36.0
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 1.3e-115 421.8 991 31.5
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 2.8e-115 420.6 916 33.6
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 2.8e-115 420.6 918 33.8
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 4.8e-115 419.9 936 34.2
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 6.2e-115 419.5 915 33.7
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 6.2e-115 419.5 918 33.7
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 6.2e-115 419.5 1012 32.0
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 4.5e-113 413.3 1023 31.6
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 7.6e-113 412.5 912 35.0
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 1.3e-112 411.8 923 33.8
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 1.3e-112 411.8 1028 31.4
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 4.2e-111 406.8 843 33.9
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 9.3e-111 405.6 925 33.5
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.7e-110 404.1 921 35.1
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 4.6e-110 403.3 917 34.2
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 1.0e-109 402.1 952 32.6
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 3.0e-109 400.6 961 33.0
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 3.9e-109 400.2 994 32.9
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 1.9e-108 397.9 998 31.5
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.3e-108 397.1 917 33.9
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 2.8e-107 394.0 1066 30.3
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 2.8e-107 394.0 928 33.7
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 3.1e-106 390.6 982 31.6
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 1.2e-105 388.7 978 32.5
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 1.5e-105 388.3 973 31.4
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 2.0e-105 387.9 1030 31.0
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 6.4e-104 382.9 914 34.0
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 4.2e-103 380.2 999 31.9
Rhsim08G0038800 Rhododendron simsii HOM05D004735 ORTHO05D005243 5.1e-101 373.2 735 35.6
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 1.6e-99 368.2 923 33.5
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 1.1e-95 355.5 938 33.0
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 3.2e-95 354.0 1053 29.2
Ciclev10014280m.g Citrus clementina HOM05D004735 ORTHO05D005243 1.9e-92 344.7 817 34.1
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 1.2e-89 335.5 979 30.5
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 3.4e-89 334.0 1005 29.7
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 5.0e-88 330.1 1003 30.4
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 8.5e-88 329.3 998 29.4
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 1.6e-86 325.1 1072 27.8
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 6.1e-86 323.2 999 29.1
COL.COLO4_13380 Corchorus olitorius HOM05D004735 ORTHO05D005243 6.7e-85 319.7 680 34.3
Cc07_g01350 Coffea canephora HOM05D004735 ORTHO05D005243 8.8e-85 319.3 494 39.3
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 7.4e-84 316.2 1011 30.8
Peaxi162Scf00420g00844 Petunia axillaris HOM05D004735 ORTHO05D005243 7.4e-84 316.2 810 31.0
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 1.4e-82 312.0 1013 30.0
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 1.8e-82 311.6 1027 28.4
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 2.9e-80 304.3 1045 27.7
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 7.2e-79 299.7 1018 29.4
Solyc02g094540.4 Solanum lycopersicum HOM05D004735 ORTHO05D005243 2.1e-78 298.1 771 30.6
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 4.7e-78 297.0 1072 26.4
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 1.0e-77 295.8 1097 26.3
SGA_v2.0_scaffold423G51443 Striga asiatica HOM05D004735 ORTHO05D005243 1.0e-77 295.8 863 31.1
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 1.4e-77 295.4 896 30.0
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 3.0e-77 294.3 971 28.8
Gohir.A11G063900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.6e-76 291.2 633 35.7
HanXRQChr17g0550891 Helianthus annuus HOM05D004735 ORTHO05D005243 2.6e-76 291.2 888 30.7
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 2.4e-74 284.6 976 30.2
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 3.1e-74 284.3 986 29.2
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 7.0e-74 283.1 994 29.0
Gohir.A11G063833 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.2e-73 282.3 529 37.8
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 3.5e-73 280.8 1017 28.1
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 2.2e-72 278.1 908 29.0
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 2.5e-71 274.6 943 29.8
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 7.2e-71 273.1 975 29.4
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 9.4e-71 272.7 943 29.9
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 2.7e-70 271.2 941 29.8
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 1.8e-69 268.5 976 28.4
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 2.6e-68 264.6 992 27.6
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 7.4e-68 263.1 999 28.0
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 6.3e-67 260.0 950 29.1
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 6.3e-67 260.0 1018 27.4
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 3.1e-66 257.7 950 28.9
PGSC0003DMG400020237 Solanum tuberosum HOM05D004735 ORTHO05D005243 3.1e-66 257.7 468 36.3
TPR.G30897 Trifolium pratense HOM05D004735 ORTHO05D005243 1.3e-64 252.3 983 28.2
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 2.9e-64 251.1 994 27.1
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 1.9e-63 248.4 916 28.4
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 9.4e-63 246.1 980 25.8
Lalb_Chr22g0359831 Lupinus albus HOM05D004735 ORTHO05D005243 1.4e-61 242.3 610 31.6
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 2.6e-60 238.0 972 27.9
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 5.7e-60 236.9 264 51.5
ECA246G4565 Erigeron canadensis HOM05D004735 ORTHO05D005243 1.4e-58 232.3 459 36.6
unitig_0.g1642 Utricularia gibba HOM05D004735 ORTHO05D005243 7.2e-47 193.4 636 28.0
CDE06G2773 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 1.6e-46 192.2 414 33.1
ATR0582G141 Amborella trichopoda HOM05D004735 ORTHO05D005243 4.9e-43 180.6 417 33.3
CSS0011678 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 6.4e-35 153.7 142 57.7
Gohir.A11G063866 Gossypium hirsutum HOM05D004735 ORTHO05D005243 9.2e-34 149.8 226 40.7
CSS0050200 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 2.0e-33 148.7 246 37.4
BraA10t44508Z Brassica rapa HOM05D000139 ORTHO05D005243 3.9e-32 144.4 644 27.5
Lalb_Chr22g0359841 Lupinus albus HOM05D004735 ORTHO05D005243 4.3e-31 141.0 218 39.9
Actinidia19551 Actinidia chinensis HOM05D004735 ORTHO05D005243 1.2e-30 139.4 272 33.1
CSS0009135 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 3.6e-30 137.9 236 36.9
CSS0035487 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 4.7e-30 137.5 240 36.7
Peaxi162Scf00420g00843 Petunia axillaris HOM05D004735 ORTHO05D005243 7.5e-28 130.2 245 34.3
CDE02G2610 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 2.1e-25 122.1 647 26.4
Solyc02g094530.1 Solanum lycopersicum HOM05D004735 ORTHO05D005243 6.0e-25 120.6 201 36.3
Zm00001eb307010 Zea mays HOM05D004735 ORTHO05D005243 7.8e-25 120.2 498 24.9
CSS0009912 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 3.0e-24 118.2 98 61.2
Dinv33274 Davidia involucrata HOM05D004735 ORTHO05D005243 3.9e-24 117.9 177 43.5
Cc07_g01360 Coffea canephora HOM05D004735 ORTHO05D005243 6.6e-24 117.1 207 35.7
Cc07_g01340 Coffea canephora HOM05D004735 ORTHO05D005243 9.5e-23 113.2 107 57.9
Lj7A617T73 Lonicera japonica HOM05D004735 ORTHO05D005243 2.8e-22 111.7 104 55.8
TPR.G28482 Trifolium pratense HOM05D004735 ORTHO05D005243 6.0e-17 94.0 91 54.9
BolC2t06598H Brassica oleracea HOM05D000139 ORTHO05D000103 1.3e-16 92.8 89 52.8
Psat7g164720 Pisum sativum HOM05D000121 ORTHO05D000102 1.7e-16 92.4 98 50.0
C02p06510 Brassica napus HOM05D000139 ORTHO05D000103 5.1e-16 90.9 89 51.7
SEGI_21903 Sequoiadendron giganteum HOM05D004735 ORTHO05D005243 2.8e-14 85.1 221 28.1
CSS0016869 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 4.7e-14 84.3 89 56.2
SHI13678 Sapria himalayana HOM05D004735 ORTHO05D005243 2.0e-12 79.0 104 44.2
CDE02G4423 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 5.4e-10 70.9 84 45.2


User provided reference genes

Program Settings