Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.8e-182 642.5 332 100.0
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 4.1e-46 189.5 339 38.6
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 3.3e-43 179.9 338 38.5
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 7.5e-40 168.7 375 34.1
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 9.9e-40 168.3 342 36.0
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.9e-39 166.8 335 34.6
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 5.4e-38 162.5 343 32.4
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 7.1e-38 162.2 391 31.5
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 2.1e-37 160.6 339 34.5
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.3e-36 157.9 343 33.8
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.3e-36 157.1 348 33.9
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 3.0e-36 156.8 340 37.4
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 3.0e-36 156.8 344 34.6
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 3.0e-36 156.8 346 34.1
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 6.6e-36 155.6 338 32.8
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.1e-35 154.8 428 30.6
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 4.3e-35 152.9 334 31.4
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 1.2e-34 151.4 337 31.8
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.6e-34 151.0 433 30.5
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 8.1e-34 148.7 269 35.3
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 8.1e-34 148.7 340 32.4
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 1.8e-33 147.5 273 37.4
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 4.0e-33 146.4 341 33.7
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 5.2e-33 146.0 199 39.2
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 2.0e-32 144.1 155 43.9
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 2.0e-32 144.1 359 34.3
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 4.4e-32 142.9 144 46.5
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.3e-31 141.4 299 35.1
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 1.3e-31 141.4 334 32.3
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 2.2e-31 140.6 362 30.7
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.4e-30 137.9 361 30.7
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 7.1e-30 135.6 248 36.7
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 9.2e-30 135.2 369 30.6
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 9.2e-30 135.2 147 46.3
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 9.2e-30 135.2 204 38.2
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 2.1e-29 134.0 322 32.9
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.7e-29 133.7 361 30.2
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 2.7e-29 133.7 253 35.2
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 3.5e-29 133.3 221 35.7
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 4.6e-29 132.9 213 36.6
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 7.8e-29 132.1 248 35.9
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 7.8e-29 132.1 361 30.2
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 3.9e-28 129.8 364 30.2
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 5.1e-28 129.4 255 36.1
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.1e-27 128.3 347 30.8
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 1.1e-27 128.3 256 32.0
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.5e-27 127.9 307 29.6
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 2.5e-27 127.1 144 43.8
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 2.5e-27 127.1 226 33.6
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 5.6e-27 125.9 204 38.2
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 7.3e-27 125.6 314 31.2
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 7.3e-27 125.6 164 42.7
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 9.6e-27 125.2 148 40.5
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.2e-26 124.8 145 46.2
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 1.6e-26 124.4 341 27.6
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 2.1e-26 124.0 204 34.8
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 4.7e-26 122.9 303 30.7
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 8.1e-26 122.1 142 47.2
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 8.1e-26 122.1 208 34.6
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.4e-25 121.3 311 32.5
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 1.8e-25 120.9 162 39.5
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 2.4e-25 120.6 299 29.4
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 9.0e-25 118.6 146 44.5
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 2.6e-24 117.1 338 31.1
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 2.6e-24 117.1 168 40.5
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 2.6e-24 117.1 139 43.2
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 3.4e-24 116.7 143 40.6
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 4.4e-24 116.3 200 36.0
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 5.8e-24 115.9 207 34.3
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 7.6e-24 115.5 169 39.6
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 9.9e-24 115.2 143 39.9
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 1.7e-23 114.4 248 30.6
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 3.8e-23 113.2 334 27.8
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 4.9e-23 112.8 181 38.7
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 4.9e-23 112.8 296 30.4
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 6.4e-23 112.5 144 41.7
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 6.4e-23 112.5 144 41.7
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 8.4e-23 112.1 150 39.3
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.1e-22 111.7 187 37.4
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.1e-22 111.7 130 44.6
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 1.1e-22 111.7 130 44.6
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 1.4e-22 111.3 295 31.2
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.4e-22 111.3 213 33.8
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 1.9e-22 110.9 147 42.9
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 3.2e-22 110.2 140 43.6
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 5.4e-22 109.4 132 43.2
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 9.3e-22 108.6 144 38.9
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 9.3e-22 108.6 139 41.0
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 1.6e-21 107.8 285 29.5
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.6e-21 107.8 143 42.0
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.6e-21 107.8 130 43.1
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 2.1e-21 107.5 145 40.0
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 2.1e-21 107.5 199 33.7
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 2.7e-21 107.1 139 41.0
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 3.5e-21 106.7 201 32.3
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 6.0e-21 105.9 145 39.3
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 7.8e-21 105.5 140 41.4
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 1.3e-20 104.8 144 37.5
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 1.7e-20 104.4 164 39.0
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 3.0e-20 103.6 143 41.3
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 3.9e-20 103.2 139 40.3
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 6.6e-20 102.4 313 28.8
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 1.1e-19 101.7 310 31.6
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 1.5e-19 101.3 308 28.2
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.5e-19 101.3 278 32.0
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 1.9e-19 100.9 141 41.1
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 3.3e-19 100.1 415 26.5
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 5.6e-19 99.4 142 38.0
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 2.1e-18 97.4 135 40.0
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 2.1e-18 97.4 144 36.8
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 4.8e-18 96.3 198 34.3
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 8.1e-18 95.5 133 39.8
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 8.1e-18 95.5 255 29.4
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 3.1e-17 93.6 143 34.3
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 4.5e-16 89.7 264 27.3
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 6.4e-15 85.9 89 41.6
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 1.4e-14 84.7 218 31.7
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 1.4e-14 84.7 96 45.8
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 1.9e-14 84.3 139 37.4
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 2.4e-14 84.0 138 33.3
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 7.1e-14 82.4 139 33.1
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 1.2e-13 81.6 142 34.5
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 6.0e-13 79.3 330 27.3
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 2.3e-12 77.4 127 34.6
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.5e-11 73.9 235 28.9
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 1.6e-10 71.2 97 38.1
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 2.8e-10 70.5 82 41.5
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 2.4e-09 67.4 124 31.5
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 5.3e-09 66.2 106 35.8
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 6.9e-09 65.9 70 45.7
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 2.2e-07 60.8 83 42.2
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 2.9e-07 60.5 190 25.8


User provided reference genes

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