Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 4.2e-215 751.1 390 100.0
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 4.5e-108 395.6 396 58.3
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 1.8e-104 383.6 401 59.1
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 6.7e-104 381.7 384 59.1
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 6.7e-104 381.7 384 59.1
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 3.1e-101 372.9 427 55.0
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 6.9e-101 371.7 439 52.4
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 1.5e-100 370.5 446 52.5
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 2.0e-100 370.2 438 53.4
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.3e-99 367.5 439 51.0
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 6.5e-99 365.2 428 53.5
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 8.4e-99 364.8 393 55.7
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 3.2e-98 362.8 424 51.7
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 1.2e-97 360.9 400 55.2
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 7.9e-97 358.2 411 52.6
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 1.3e-96 357.5 446 50.2
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 6.7e-96 355.1 381 55.6
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 1.1e-95 354.4 437 50.8
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 2.5e-95 353.2 439 50.1
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 4.3e-95 352.4 397 54.4
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 5.7e-95 352.1 382 55.2
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 5.7e-95 352.1 426 52.6
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 9.6e-95 351.3 431 52.4
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 2.8e-94 349.7 366 56.8
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 3.7e-94 349.4 419 51.1
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 3.7e-94 349.4 396 55.3
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 4.8e-94 349.0 460 49.8
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 6.3e-94 348.6 415 52.8
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.4e-93 347.4 450 51.1
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 2.4e-93 346.7 408 53.4
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 3.1e-93 346.3 407 52.3
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 6.9e-93 345.1 371 58.8
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 9.0e-93 344.7 379 58.0
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 5.9e-92 342.0 391 52.2
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 1.0e-91 341.3 396 54.3
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 1.0e-91 341.3 373 56.3
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 1.3e-91 340.9 390 53.8
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 1.7e-91 340.5 428 50.7
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 2.2e-91 340.1 405 51.4
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 6.5e-91 338.6 431 51.3
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 1.4e-90 337.4 439 50.6
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.2e-89 334.3 372 54.6
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 2.1e-89 333.6 442 48.6
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 1.0e-88 331.3 396 53.5
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 1.8e-88 330.5 391 52.4
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 2.3e-88 330.1 443 50.1
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 2.5e-87 326.6 410 51.5
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 5.7e-87 325.5 399 51.4
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 5.7e-87 325.5 464 48.1
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 2.8e-86 323.2 426 48.8
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 4.8e-86 322.4 374 53.2
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 6.3e-86 322.0 399 50.9
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 8.2e-86 321.6 393 50.9
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 2.4e-85 320.1 405 50.6
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 3.1e-85 319.7 370 55.1
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 6.9e-85 318.5 384 51.8
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 2.6e-84 316.6 396 52.0
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 7.7e-84 315.1 401 50.1
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.0e-83 314.7 458 46.3
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 2.2e-83 313.5 427 48.7
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 6.5e-83 312.0 371 53.1
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 8.5e-83 311.6 502 45.6
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 3.2e-82 309.7 364 50.8
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 5.5e-82 308.9 426 48.4
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 1.2e-81 307.8 373 52.0
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 7.9e-81 305.1 384 50.5
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 5.1e-80 302.4 387 50.1
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 2.5e-79 300.1 358 53.1
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 1.7e-78 297.4 452 43.4
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 2.2e-78 297.0 428 46.0
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 2.6e-76 290.0 461 43.8
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 2.6e-76 290.0 461 43.8
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 2.6e-76 290.0 410 47.6
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 7.7e-76 288.5 414 44.9
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 1.7e-75 287.3 435 45.1
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 2.2e-75 287.0 409 48.7
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 4.2e-74 282.7 312 56.1
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 9.4e-74 281.6 409 44.7
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 2.1e-73 280.4 423 44.9
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.4e-72 277.7 437 42.8
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 5.1e-72 275.8 462 41.3
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 2.0e-71 273.9 362 48.9
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 2.0e-71 273.9 308 56.2
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 7.4e-71 271.9 385 47.5
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 1.3e-70 271.2 425 44.5
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 6.3e-70 268.9 363 51.0
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.1e-69 268.1 413 44.1
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.8e-69 267.3 416 46.4
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 1.6e-68 264.2 308 53.2
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 2.2e-67 260.4 372 47.0
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 1.5e-66 257.7 284 55.6
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 1.4e-64 251.1 393 43.8
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 3.3e-63 246.5 383 43.3
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 5.7e-63 245.7 456 39.3
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 7.5e-63 245.4 371 43.9
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 3.7e-62 243.0 390 42.3
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 1.8e-61 240.7 334 45.8
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 1.8e-61 240.7 627 34.4
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 3.1e-61 240.0 447 38.9
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 3.1e-61 240.0 443 40.6
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 9.1e-61 238.4 447 38.9
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 5.9e-60 235.7 584 33.9
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 5.9e-60 235.7 584 33.9
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 1.3e-59 234.6 320 45.6
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 2.9e-59 233.4 373 44.0
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 1.5e-58 231.1 299 47.5
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 1.6e-57 227.6 459 38.6
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 4.7e-57 226.1 351 43.6
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 3.1e-53 213.4 432 38.0
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.6e-52 211.1 298 46.3
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.0e-51 208.4 366 39.1
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 2.2e-51 207.2 323 42.7
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 3.2e-50 203.4 119 84.9
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 4.7e-49 199.5 306 44.8
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 9.8e-47 191.8 389 39.6
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 1.7e-46 191.0 363 41.0
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 2.8e-46 190.3 485 33.4
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 1.4e-45 188.0 359 40.1
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 1.3e-43 181.4 102 83.3
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 1.5e-42 177.9 213 48.4
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 8.9e-40 168.7 201 48.8
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 1.7e-38 164.5 352 35.8
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 8.3e-38 162.2 295 40.0
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 6.6e-35 152.5 97 72.2
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.5e-34 151.4 242 46.7
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 3.6e-33 146.7 185 52.4
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.7e-28 130.6 67 94.0
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.6e-28 129.8 288 37.2
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 6.0e-28 129.4 322 34.2
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.0e-27 128.6 193 44.0
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 3.3e-26 123.6 193 42.5
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.0e-24 116.7 74 81.1
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 2.0e-23 114.4 146 48.6
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.3e-22 111.7 64 81.2
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 1.7e-22 111.3 311 35.0
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 2.4e-21 107.5 70 77.1
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 4.1e-21 106.7 109 45.9
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 1.1e-18 98.6 265 30.6
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 9.9e-15 85.5 51 76.5
Haze_10772 Corylus avellana HOM05D004969 ORTHO05D006085 1.0e-11 75.5 94 53.2
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 6.6e-11 72.8 67 52.2
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.5e-10 71.6 274 31.8
CARHR196590 Cardamine hirsuta HOM05D004969 ORTHO05D006085 7.3e-10 69.3 96 44.8
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 3.6e-09 67.0 137 42.3
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 1.4e-08 65.1 121 40.5
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 1.2e-07 62.0 52 61.5
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 1.2e-07 62.0 38 73.7
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 8.4e-06 55.8 139 36.7


User provided reference genes

Program Settings