Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 3.5e-65 251.5 130 100.0
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 1.9e-34 149.4 85 91.8
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 1.9e-34 149.4 85 90.6
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 2.4e-34 149.1 89 87.6
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 3.2e-34 148.7 85 91.8
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 4.1e-34 148.3 89 87.6
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 5.4e-34 147.9 89 86.5
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 5.4e-34 147.9 89 86.5
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 9.2e-34 147.1 89 86.5
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 9.2e-34 147.1 89 85.4
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 1.2e-33 146.7 85 89.4
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 1.6e-33 146.4 89 86.5
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 1.6e-33 146.4 83 91.6
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 1.6e-33 146.4 85 90.6
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 2.1e-33 146.0 107 74.8
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 2.7e-33 145.6 89 85.4
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 3.5e-33 145.2 87 89.7
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 3.5e-33 145.2 87 89.7
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 4.6e-33 144.8 89 84.3
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 4.6e-33 144.8 89 88.8
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 6.0e-33 144.4 85 88.2
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 6.0e-33 144.4 89 85.4
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 7.8e-33 144.1 89 85.4
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 7.8e-33 144.1 89 85.4
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 7.8e-33 144.1 89 85.4
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 7.8e-33 144.1 89 85.4
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.0e-32 143.7 85 85.9
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 1.3e-32 143.3 89 84.3
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 1.3e-32 143.3 89 84.3
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 1.7e-32 142.9 83 91.6
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 1.7e-32 142.9 86 87.2
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 2.3e-32 142.5 89 84.3
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 2.3e-32 142.5 89 84.3
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 2.3e-32 142.5 89 84.3
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 2.3e-32 142.5 89 84.3
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 3.0e-32 142.1 89 85.4
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 3.0e-32 142.1 85 85.9
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 3.9e-32 141.7 89 80.9
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 3.9e-32 141.7 89 83.1
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 3.9e-32 141.7 79 94.9
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 5.1e-32 141.4 81 91.4
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 6.6e-32 141.0 89 83.1
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 1.1e-31 140.2 86 86.0
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.1e-31 140.2 86 86.0
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.1e-31 140.2 86 86.0
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.1e-31 140.2 86 86.0
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 1.1e-31 140.2 86 86.0
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 1.1e-31 140.2 88 86.4
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 1.5e-31 139.8 89 79.8
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.9e-31 139.4 89 83.1
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 2.5e-31 139.0 86 82.6
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 3.3e-31 138.7 79 91.1
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 3.3e-31 138.7 83 83.1
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 4.3e-31 138.3 82 89.0
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 4.3e-31 138.3 89 80.9
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 5.6e-31 137.9 85 84.7
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 5.6e-31 137.9 74 95.9
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 7.3e-31 137.5 79 88.6
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 7.3e-31 137.5 79 88.6
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 7.3e-31 137.5 89 80.9
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 7.3e-31 137.5 89 80.9
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 1.2e-30 136.7 91 82.4
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 1.6e-30 136.3 89 78.7
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 2.1e-30 136.0 79 89.9
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 2.8e-30 135.6 103 73.8
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 2.8e-30 135.6 85 81.2
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 3.6e-30 135.2 78 88.5
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 3.6e-30 135.2 78 89.7
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 1.8e-29 132.9 89 78.7
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 1.8e-29 132.9 86 82.6
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 3.1e-29 132.1 89 78.7
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 3.1e-29 132.1 84 78.6
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 4.0e-29 131.7 86 75.6
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 4.0e-29 131.7 86 75.6
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 4.0e-29 131.7 78 87.2
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 4.0e-29 131.7 78 87.2
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 4.0e-29 131.7 86 81.4
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 5.2e-29 131.3 81 81.5
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 5.2e-29 131.3 78 85.9
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 8.9e-29 130.6 79 82.3
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 8.9e-29 130.6 79 82.3
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 8.9e-29 130.6 79 82.3
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 8.9e-29 130.6 79 82.3
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 8.9e-29 130.6 79 82.3
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 8.9e-29 130.6 79 82.3
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 8.9e-29 130.6 89 77.5
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 8.9e-29 130.6 79 82.3
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 8.9e-29 130.6 79 82.3
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 1.2e-28 130.2 81 80.2
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 1.2e-28 130.2 79 84.8
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 2.0e-28 129.4 78 84.6
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 4.4e-28 128.3 83 77.1
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 4.4e-28 128.3 79 82.3
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 7.5e-28 127.5 89 76.4
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 1.7e-27 126.3 78 80.8
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 1.7e-27 126.3 78 80.8
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 1.7e-27 126.3 78 80.8
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 2.9e-27 125.6 81 76.5
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 4.9e-27 124.8 78 79.5
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 8.3e-27 124.0 79 78.5
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 2.4e-26 122.5 81 79.0
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 3.2e-26 122.1 71 85.9
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 1.2e-25 120.2 78 75.6
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 7.8e-25 117.5 76 76.3
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 7.8e-25 117.5 76 76.3
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 5.1e-24 114.8 86 68.6
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 8.6e-24 114.0 76 72.4
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.9e-23 112.8 68 88.2
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 2.0e-20 102.8 54 92.6
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 7.6e-20 100.9 62 80.6
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 2.2e-19 99.4 81 58.0
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 3.8e-19 98.6 57 82.5
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 6.6e-16 87.8 78 52.6
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 1.3e-11 73.6 50 62.0
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 6.0e-09 64.7 73 45.2


User provided reference genes

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