Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 1.1e-193 679.9 353 100.0
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 1.1e-193 679.9 353 100.0
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 5.0e-82 308.9 362 52.2
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 5.0e-82 308.9 362 52.2
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.8e-77 293.1 365 49.9
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 2.4e-76 290.0 364 49.7
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 6.5e-74 282.0 366 49.2
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 5.5e-73 278.9 383 46.5
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.8e-69 266.5 385 45.5
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 3.7e-69 266.2 356 47.5
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 4.8e-69 265.8 362 47.5
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.1e-68 262.7 366 47.5
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 7.0e-68 261.9 372 44.9
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 3.5e-67 259.6 379 45.1
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 7.7e-67 258.5 364 46.4
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.7e-66 257.3 379 45.4
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 2.2e-66 256.9 362 46.1
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.2e-66 256.9 378 44.4
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 1.9e-65 253.8 382 45.0
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 3.2e-65 253.1 361 48.2
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 5.5e-65 252.3 366 44.5
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.6e-64 250.8 383 44.4
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.0e-63 248.1 361 45.2
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 2.6e-62 243.4 377 41.6
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 4.4e-62 242.7 383 42.3
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 7.5e-62 241.9 367 44.7
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 9.7e-62 241.5 380 43.4
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 2.2e-61 240.4 393 41.0
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 2.8e-61 240.0 371 43.9
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 2.8e-61 240.0 380 42.4
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 9.1e-60 235.0 399 40.9
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.6e-59 234.2 388 42.3
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.0e-59 233.8 376 42.6
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 2.7e-59 233.4 384 42.4
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.0e-58 231.5 376 42.3
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.0e-58 231.5 376 42.3
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 1.0e-58 231.5 372 43.8
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 2.2e-58 230.3 377 43.0
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.9e-58 229.9 376 42.0
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 3.8e-58 229.6 381 43.0
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 5.0e-58 229.2 385 42.9
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.5e-57 226.9 391 42.7
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 7.2e-57 225.3 386 41.2
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 9.4e-57 224.9 378 41.8
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 2.7e-56 223.4 377 41.4
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 4.7e-56 222.6 394 41.6
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 4.7e-56 222.6 354 44.9
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 2.3e-55 220.3 388 40.7
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.3e-55 220.3 381 39.9
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 2.0e-54 217.2 384 40.6
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.7e-53 214.2 369 38.5
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 4.8e-53 212.6 363 41.0
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 7.0e-52 208.8 390 39.2
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 9.1e-52 208.4 376 38.8
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 9.1e-52 208.4 376 38.8
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 9.1e-52 208.4 379 41.2
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 1.6e-51 207.6 396 38.4
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 2.7e-51 206.8 379 39.8
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 7.7e-51 205.3 368 39.7
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.0e-50 204.9 329 41.3
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.0e-50 204.9 377 38.5
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 2.9e-50 203.4 386 37.6
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 5.0e-50 202.6 378 38.4
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 8.6e-50 201.8 355 40.6
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 8.6e-50 201.8 373 41.3
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.5e-49 200.3 374 39.3
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.2e-48 198.0 387 38.5
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.2e-48 198.0 389 38.0
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 3.6e-48 196.4 387 36.7
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.7e-48 196.1 393 38.2
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 6.1e-48 195.7 368 40.2
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 6.1e-48 195.7 368 40.2
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 8.0e-48 195.3 374 37.7
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.4e-47 194.5 375 38.9
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 1.4e-47 194.5 380 38.7
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 2.3e-47 193.7 379 37.7
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.3e-47 193.7 302 45.7
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 3.0e-47 193.4 302 45.4
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 6.8e-47 192.2 356 38.2
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 1.2e-46 191.4 361 39.6
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 7.5e-46 188.7 382 37.7
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 2.2e-45 187.2 390 37.9
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 8.3e-45 185.3 386 39.4
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 2.4e-44 183.7 365 40.0
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 1.6e-43 181.0 374 36.4
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 4.5e-43 179.5 376 37.2
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 5.9e-43 179.1 377 35.3
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 5.6e-41 172.6 378 34.7
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 2.8e-40 170.2 302 44.0
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 4.7e-40 169.5 375 36.3
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.0e-39 168.3 274 40.9
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 4.0e-39 166.4 318 38.7
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 6.8e-39 165.6 363 38.8
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 6.8e-39 165.6 352 35.8
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 8.9e-39 165.2 323 38.7
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 1.5e-38 164.5 370 37.6
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.6e-38 163.7 323 38.4
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 5.7e-38 162.5 360 35.6
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 5.7e-38 162.5 355 35.2
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 5.7e-38 162.5 370 37.3
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 5.7e-38 162.5 384 36.5
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 9.8e-38 161.8 323 38.1
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 2.9e-37 160.2 351 37.0
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 3.7e-37 159.8 377 35.3
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 3.7e-37 159.8 358 37.2
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 4.9e-37 159.5 366 36.6
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 6.4e-37 159.1 370 36.2
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 3.2e-36 156.8 304 39.8
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 4.1e-36 156.4 370 35.7
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.6e-35 154.5 298 43.6
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 2.0e-35 154.1 313 36.7
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 2.7e-35 153.7 314 37.6
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 7.8e-35 152.1 374 35.6
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.5e-33 147.1 372 34.9
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 2.5e-33 147.1 366 34.7
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 3.3e-33 146.7 366 33.9
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.2e-32 144.8 333 37.8
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 2.1e-32 144.1 303 39.9
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.2e-32 142.5 368 34.2
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 5.2e-31 139.4 371 34.5
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 6.8e-31 139.0 214 47.7
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 1.2e-30 138.3 371 34.5
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 7.5e-30 135.6 372 30.4
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.3e-29 134.8 335 35.5
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.4e-28 131.3 295 37.6
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.4e-28 131.3 355 34.6
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 4.1e-28 129.8 296 36.8
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 2.7e-27 127.1 287 37.3
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 6.0e-27 125.9 370 32.4
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 7.8e-27 125.6 287 38.0
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 7.8e-27 125.6 376 32.4
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 3.0e-26 123.6 297 37.0
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 3.9e-26 123.2 185 47.6
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 6.6e-26 122.5 149 51.0
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.5e-25 121.3 317 36.3
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-24 118.2 288 35.1
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 8.9e-23 112.1 211 44.1
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.2e-22 111.7 297 36.0
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-22 111.7 297 36.0
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 5.8e-22 109.4 287 34.1
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 9.9e-22 108.6 219 40.6
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 3.7e-21 106.7 382 30.6
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 8.3e-21 105.5 346 30.9
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.2e-19 101.7 306 33.7
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.6e-19 99.8 167 42.5
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 6.0e-19 99.4 286 35.3
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 3.0e-18 97.1 368 29.1
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.8e-15 87.8 286 32.5
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.5e-14 84.7 290 33.1
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 3.4e-14 83.6 315 29.8
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 3.8e-13 80.1 288 29.9
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.1e-12 78.6 288 31.9
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 4.1e-12 76.6 245 34.7
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 7.1e-12 75.9 139 43.9
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 9.2e-12 75.5 178 37.6
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 3.9e-10 70.1 172 37.2
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 3.9e-10 70.1 172 37.2
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 2.5e-09 67.4 292 30.8
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 4.3e-09 66.6 293 29.7
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 5.8e-06 56.2 293 29.0


User provided reference genes

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