Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 8.5e-134 480.3 240 100.0
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 2.3e-67 259.6 240 60.0
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.3e-62 243.0 234 54.7
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 3.0e-62 242.7 241 56.0
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 3.0e-62 242.7 240 55.8
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 5.6e-61 238.4 234 54.7
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 3.6e-60 235.7 217 58.1
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 3.6e-60 235.7 231 53.2
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 4.7e-60 235.3 236 53.8
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 1.4e-59 233.8 240 53.8
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 8.9e-59 231.1 227 53.3
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.5e-58 230.3 227 53.3
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 4.4e-58 228.8 214 55.1
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 7.6e-58 228.0 214 55.1
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 9.9e-58 227.6 242 54.5
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 9.9e-58 227.6 240 52.1
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.3e-57 227.3 241 53.1
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.9e-57 226.1 234 55.1
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 3.8e-57 225.7 214 54.7
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 8.4e-57 224.6 241 53.9
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 1.4e-56 223.8 267 49.4
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 1.9e-56 223.4 216 53.2
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.9e-56 223.4 239 54.4
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 5.4e-56 221.9 234 52.6
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 9.3e-56 221.1 224 54.5
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 1.2e-55 220.7 238 50.0
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.2e-55 220.7 233 51.5
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.2e-55 220.7 236 50.0
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.6e-55 220.3 240 50.4
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 3.5e-55 219.2 236 50.4
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 6.0e-55 218.4 236 50.0
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 1.0e-54 217.6 234 50.9
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 1.3e-54 217.2 238 51.3
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 1.3e-54 217.2 223 52.0
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 3.0e-54 216.1 240 50.0
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 3.9e-54 215.7 240 49.6
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 5.1e-54 215.3 234 51.3
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 1.1e-53 214.2 237 51.5
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 1.9e-53 213.4 236 50.0
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.5e-53 213.0 243 50.2
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 7.3e-53 211.5 234 48.3
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 9.6e-53 211.1 288 44.8
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.3e-52 210.7 235 48.5
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 1.6e-52 210.3 229 51.5
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.6e-52 210.3 219 49.8
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.8e-51 206.8 213 52.6
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 2.4e-51 206.5 262 47.7
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.2e-50 204.1 231 49.8
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 2.0e-50 203.4 240 47.9
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 2.6e-50 203.0 236 50.8
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.4e-50 202.6 209 51.2
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.4e-50 202.6 209 51.2
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.5e-50 202.2 228 49.6
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.5e-50 202.2 228 49.6
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 4.5e-50 202.2 235 52.3
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.8e-49 199.1 225 49.8
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 6.4e-49 198.4 210 50.5
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 1.4e-48 197.2 236 47.9
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.4e-48 197.2 240 48.8
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 3.2e-48 196.1 239 47.3
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 5.4e-48 195.3 259 45.6
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 4.6e-47 192.2 235 49.8
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 1.8e-46 190.3 282 48.2
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.3e-46 189.9 180 52.2
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 3.0e-46 189.5 242 47.9
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 3.9e-46 189.1 225 50.2
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 3.9e-46 189.1 236 46.2
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 6.7e-46 188.3 200 47.0
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 3.3e-45 186.0 220 46.8
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 7.4e-45 184.9 226 46.5
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 2.1e-44 183.3 233 45.1
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 2.8e-44 183.0 233 45.5
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 6.2e-44 181.8 203 48.3
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 6.2e-44 181.8 200 47.0
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 8.1e-44 181.4 201 48.3
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 8.1e-44 181.4 229 45.9
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-43 180.6 218 46.3
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.8e-43 180.3 215 45.1
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 3.1e-43 179.5 238 46.6
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 3.1e-43 179.5 240 44.6
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 1.2e-42 177.6 235 48.1
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-42 177.2 217 46.1
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 1.5e-42 177.2 218 45.4
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 2.6e-42 176.4 227 47.1
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.7e-41 173.7 219 44.7
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.2e-41 173.3 240 46.7
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 6.4e-41 171.8 241 44.8
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 1.4e-40 170.6 232 43.5
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.9e-40 170.2 242 48.8
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 7.1e-40 168.3 239 44.8
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.6e-39 167.2 220 43.6
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 1.6e-39 167.2 171 55.0
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 2.1e-39 166.8 245 41.2
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 2.1e-39 166.8 241 43.6
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.9e-39 164.9 218 43.6
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-38 164.5 218 43.1
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 3.0e-38 162.9 175 54.3
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.0e-38 162.9 194 45.4
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 6.7e-38 161.8 204 44.6
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 4.3e-37 159.1 238 43.3
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 1.3e-36 157.5 225 41.3
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 4.8e-36 155.6 239 40.2
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 8.2e-36 154.8 241 43.2
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 1.1e-35 154.5 225 42.2
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 5.3e-35 152.1 250 44.0
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 5.3e-35 152.1 230 41.3
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-34 150.6 204 43.1
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 2.0e-34 150.2 224 41.5
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 5.8e-34 148.7 220 39.1
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 7.6e-34 148.3 218 42.2
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 7.6e-34 148.3 236 40.3
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 1.0e-33 147.9 224 40.6
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 4.9e-33 145.6 117 59.8
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 8.4e-33 144.8 182 50.5
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 1.1e-32 144.4 201 42.8
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.9e-32 143.7 170 45.9
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 1.9e-32 143.7 236 41.1
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 4.2e-32 142.5 235 41.7
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 7.1e-32 141.7 237 37.1
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.3e-30 136.7 172 44.2
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 2.5e-29 133.3 213 38.5
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 9.7e-29 131.3 222 37.4
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 9.7e-29 131.3 241 39.8
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 1.3e-28 131.0 238 38.2
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.2e-28 128.3 221 36.7
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 5.3e-27 125.6 209 37.8
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.5e-26 124.0 237 37.6
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 1.5e-26 124.0 107 57.9
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 2.0e-26 123.6 246 35.8
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.9e-24 117.1 206 37.4
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 2.5e-24 116.7 237 37.1
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 7.2e-24 115.2 99 64.6
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 1.2e-23 114.4 162 40.7
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 1.3e-22 110.9 239 33.9
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-21 107.1 171 40.4
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-20 104.0 179 35.8
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.5e-18 97.4 171 39.8
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.9e-16 90.5 137 40.9
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 4.7e-15 85.9 143 35.0
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 6.1e-15 85.5 144 35.4
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.8e-12 76.6 193 29.0
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 2.8e-12 76.6 159 33.3
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.5e-10 69.3 93 37.6
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-09 67.8 105 39.0
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.7e-09 67.4 39 84.6
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.7e-09 67.4 54 68.5
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.5e-09 65.5 105 38.1
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 8.5e-09 65.1 82 45.1
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-08 64.3 120 31.7
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-08 64.3 93 35.5
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.9e-08 63.9 146 30.8
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 3.6e-07 59.7 107 36.4
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 6.1e-07 58.9 77 41.6
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-06 57.4 82 40.2
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-06 57.4 82 40.2


User provided reference genes

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