Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 9.0e-91 337.0 186 100.0
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 2.3e-62 242.7 144 93.8
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 5.1e-62 241.5 195 68.2
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 6.7e-62 241.1 187 70.6
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 8.8e-62 240.7 185 70.8
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 3.3e-61 238.8 186 71.5
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 9.7e-61 237.3 198 68.2
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.7e-60 236.5 186 70.4
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.7e-60 236.5 186 70.4
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.2e-60 236.1 185 70.3
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 3.7e-60 235.3 190 68.9
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 4.8e-60 235.0 189 73.0
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 8.2e-60 234.2 183 72.1
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.4e-59 233.4 182 71.4
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.8e-59 233.0 190 70.5
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 2.4e-59 232.6 186 68.3
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 3.1e-59 232.3 183 68.3
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.1e-59 231.9 182 69.2
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.1e-59 231.9 182 69.2
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.1e-59 231.9 182 70.3
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 6.9e-59 231.1 194 66.5
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 3.4e-58 228.8 183 71.0
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 7.7e-58 227.6 185 69.2
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 7.7e-58 227.6 185 69.7
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.0e-57 227.3 182 69.2
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.3e-57 226.9 185 70.3
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.7e-57 226.5 192 67.7
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.9e-57 225.7 185 68.1
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 2.9e-57 225.7 185 68.1
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.8e-57 225.3 187 66.8
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 5.0e-57 224.9 185 66.5
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 5.0e-57 224.9 178 70.8
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 6.5e-57 224.6 185 67.6
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 8.5e-57 224.2 184 65.8
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 8.5e-57 224.2 183 69.4
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 2.5e-56 222.6 184 64.7
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 3.2e-56 222.2 186 66.1
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 4.2e-56 221.9 188 70.7
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 5.5e-56 221.5 186 66.7
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 7.2e-56 221.1 182 66.5
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 7.2e-56 221.1 208 62.5
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 7.2e-56 221.1 200 69.0
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.6e-55 219.9 183 67.8
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.7e-55 218.4 184 64.1
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 7.9e-55 217.6 184 65.2
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.4e-54 216.9 186 64.0
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.8e-54 216.5 181 64.1
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.8e-54 216.5 136 80.9
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.8e-54 216.5 184 64.7
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.3e-54 216.1 185 64.9
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 3.0e-54 215.7 190 67.4
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.0e-54 215.7 184 63.0
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 3.9e-54 215.3 184 63.6
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 5.1e-54 214.9 182 68.7
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.1e-54 214.9 184 63.6
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.1e-54 214.9 184 65.2
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.1e-54 214.9 184 65.2
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.1e-54 214.9 184 65.2
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 2.0e-53 213.0 186 65.1
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 2.6e-53 212.6 186 64.5
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 2.6e-53 212.6 188 62.8
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 2.6e-53 212.6 185 69.2
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 2.6e-53 212.6 186 64.5
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 3.3e-53 212.2 187 65.2
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 3.3e-53 212.2 187 65.2
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 3.3e-53 212.2 187 65.2
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 3.3e-53 212.2 183 65.6
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 1.7e-52 209.9 182 65.4
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 2.8e-52 209.1 181 64.6
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 2.8e-52 209.1 192 61.5
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 2.8e-52 209.1 187 62.6
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 2.8e-52 209.1 182 62.6
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 3.7e-52 208.8 182 64.8
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 6.3e-52 208.0 187 64.2
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 6.3e-52 208.0 133 79.7
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 8.2e-52 207.6 187 63.6
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 1.1e-51 207.2 154 74.7
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.8e-51 206.5 184 63.6
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 2.4e-51 206.1 196 66.8
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.1e-51 205.7 193 63.2
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 5.3e-51 204.9 180 62.2
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 9.1e-51 204.1 186 68.3
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 9.1e-51 204.1 186 62.9
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 9.1e-51 204.1 184 63.0
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 9.1e-51 204.1 182 59.3
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.2e-50 203.8 186 61.8
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 2.6e-50 202.6 181 64.1
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 5.9e-50 201.4 182 63.7
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 5.9e-50 201.4 187 62.0
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 7.7e-50 201.1 184 62.5
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 7.7e-50 201.1 185 61.1
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.0e-49 200.7 183 60.7
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.0e-49 200.7 184 62.5
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.9e-49 199.1 184 62.0
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 5.0e-49 198.4 186 60.8
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 6.5e-49 198.0 188 59.6
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 6.5e-49 198.0 156 69.9
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 1.1e-48 197.2 185 60.0
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.4e-48 196.8 165 68.5
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.2e-48 195.7 186 62.4
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 4.2e-48 195.3 138 72.5
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.6e-47 193.4 183 58.5
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 1.6e-47 193.4 182 61.0
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 1.6e-47 193.4 182 61.0
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 1.0e-46 190.7 185 58.4
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 3.3e-45 185.7 137 66.4
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 7.4e-45 184.5 186 59.1
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 9.7e-45 184.1 120 74.2
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 2.2e-44 183.0 186 56.5
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 3.7e-44 182.2 193 57.0
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 5.3e-43 178.3 182 56.6
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 7.0e-43 177.9 184 63.0
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.6e-42 176.8 182 58.2
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.3e-41 173.7 165 64.2
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-40 170.6 184 57.1
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.0e-38 164.1 147 63.3
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 2.6e-37 159.5 133 60.9
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.7e-37 158.3 182 54.4
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 5.7e-37 158.3 91 84.6
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 9.1e-35 151.0 193 47.2
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.3e-33 147.1 201 44.3
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 8.5e-33 144.4 106 67.0
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 3.2e-32 142.5 101 70.3
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 3.0e-30 136.0 124 66.1
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.2e-29 134.0 124 57.3
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 2.6e-29 132.9 101 66.3
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 5.7e-29 131.7 103 62.1
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 5.7e-29 131.7 101 65.3
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 6.3e-28 128.3 98 68.4
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.4e-27 127.1 107 57.9
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 4.1e-27 125.6 116 52.6
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 4.1e-27 125.6 134 56.0
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 2.7e-26 122.9 106 61.3
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 5.9e-26 121.7 102 62.7
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 3.3e-24 115.9 115 55.7
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 2.1e-23 113.2 104 54.8
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 6.1e-23 111.7 184 42.4
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 6.1e-23 111.7 103 58.3
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 1.4e-22 110.5 110 52.7
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.8e-22 110.2 102 64.7
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.2e-22 108.6 103 53.4
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 9.8e-21 104.4 98 52.0
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 6.3e-20 101.7 101 52.5
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.6e-18 97.1 73 61.6
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 2.7e-18 96.3 107 48.6
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 4.5e-18 95.5 64 76.6
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.7e-17 93.6 98 54.1
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 1.7e-17 93.6 98 48.0
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.9e-17 92.8 67 71.6
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 9.5e-16 87.8 94 50.0
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.2e-15 87.4 121 49.6
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 2.2e-12 76.6 130 35.4


User provided reference genes

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