Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 1.1e-130 469.9 232 100.0
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 4.3e-34 149.1 231 37.2
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 8.2e-33 144.8 187 43.3
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 5.5e-29 132.1 204 39.7
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 2.1e-28 130.2 207 40.1
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 3.5e-28 129.4 213 39.9
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 8.7e-27 124.8 205 37.6
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 5.7e-26 122.1 185 41.6
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.4e-24 117.5 191 38.7
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.4e-24 116.7 212 37.3
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 2.6e-23 113.2 201 36.8
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 7.6e-23 111.7 123 42.3
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 7.6e-23 111.7 130 46.2
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 2.2e-22 110.2 231 34.6
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.2e-22 110.2 231 34.6
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 2.9e-22 109.8 218 34.9
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.8e-22 109.4 231 34.6
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 5.0e-22 109.0 134 43.3
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 6.5e-22 108.6 217 35.5
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.1e-21 107.8 183 37.2
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 3.2e-21 106.3 126 45.2
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 4.2e-21 105.9 135 43.0
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 9.4e-21 104.8 213 34.3
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 1.6e-20 104.0 230 32.6
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 1.6e-20 104.0 134 41.0
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 1.6e-20 104.0 134 42.5
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 3.6e-20 102.8 192 34.9
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 3.6e-20 102.8 192 34.9
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.6e-20 102.4 237 32.9
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 6.1e-20 102.1 209 34.0
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.4e-19 100.9 138 39.1
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 1.4e-19 100.9 192 34.9
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 1.4e-19 100.9 134 38.8
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 1.8e-19 100.5 198 35.4
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 2.3e-19 100.1 142 40.8
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 2.3e-19 100.1 142 40.8
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.0e-19 99.8 198 34.8
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.0e-19 99.8 192 33.9
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 3.0e-19 99.8 135 40.0
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.9e-19 99.4 175 35.4
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 6.7e-19 98.6 189 32.8
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 6.7e-19 98.6 154 36.4
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 1.1e-18 97.8 176 35.2
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 1.1e-18 97.8 256 32.0
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 2.5e-18 96.7 187 34.2
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.5e-18 96.7 128 43.8
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 2.5e-18 96.7 126 41.3
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 2.5e-18 96.7 134 40.3
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 4.3e-18 95.9 135 38.5
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 7.4e-18 95.1 198 33.8
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 7.4e-18 95.1 126 42.9
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 7.4e-18 95.1 134 37.3
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 9.7e-18 94.7 127 41.7
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 9.7e-18 94.7 193 33.2
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 9.7e-18 94.7 121 40.5
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 1.3e-17 94.4 198 33.8
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 3.7e-17 92.8 133 38.3
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.7e-17 92.8 138 37.7
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 4.8e-17 92.4 161 32.9
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 4.8e-17 92.4 173 30.1
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 4.8e-17 92.4 133 37.6
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 4.8e-17 92.4 172 33.1
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 4.8e-17 92.4 146 37.7
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 6.3e-17 92.0 207 29.0
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 6.3e-17 92.0 207 29.0
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 6.3e-17 92.0 133 37.6
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 6.3e-17 92.0 121 39.7
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 6.3e-17 92.0 118 44.1
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 6.3e-17 92.0 172 33.1
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 6.3e-17 92.0 172 33.1
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 6.3e-17 92.0 172 33.1
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 6.3e-17 92.0 172 33.1
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 6.3e-17 92.0 168 32.1
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 8.2e-17 91.7 231 33.8
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 8.2e-17 91.7 229 33.6
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.1e-16 91.3 115 38.3
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.1e-16 91.3 146 40.4
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 1.4e-16 90.9 118 38.1
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.8e-16 90.5 207 29.0
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 2.4e-16 90.1 133 36.8
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 2.4e-16 90.1 127 37.0
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 3.1e-16 89.7 131 33.6
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 4.1e-16 89.4 125 40.0
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 5.3e-16 89.0 202 34.7
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 5.3e-16 89.0 188 34.6
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 6.9e-16 88.6 127 37.0
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 1.2e-15 87.8 190 31.6
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.6e-15 86.7 116 42.2
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 3.4e-15 86.3 122 39.3
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.4e-15 86.3 116 42.2
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 4.5e-15 85.9 131 36.6
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 4.5e-15 85.9 162 34.0
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 4.5e-15 85.9 125 40.0
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 4.5e-15 85.9 125 40.0
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 5.9e-15 85.5 128 38.3
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 5.9e-15 85.5 123 40.7
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.3e-14 84.3 118 38.1
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.3e-14 84.3 196 30.1
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 2.9e-14 83.2 115 39.1
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 3.8e-14 82.8 131 35.9
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 3.8e-14 82.8 131 35.9
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 3.8e-14 82.8 131 35.9
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 3.8e-14 82.8 126 37.3
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 3.8e-14 82.8 144 36.1
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.0e-14 82.4 132 35.6
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 5.0e-14 82.4 153 37.9
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 6.5e-14 82.0 131 36.6
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.9e-13 80.5 132 32.6
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 2.5e-13 80.1 129 37.2
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 2.5e-13 80.1 164 32.9
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 3.2e-13 79.7 131 34.4
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-12 77.8 132 34.8
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 2.1e-12 77.0 200 29.5
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 2.1e-12 77.0 128 35.2
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.7e-12 76.6 153 34.0
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 4.7e-12 75.9 138 35.5
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.1e-12 75.5 113 38.9
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.9e-12 75.1 179 29.1
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 1.4e-11 74.3 149 32.2
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 1.4e-11 74.3 149 32.2
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 1.4e-11 74.3 119 32.8
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 1.4e-11 74.3 196 32.1
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.4e-11 74.3 131 34.4
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.8e-11 73.9 98 44.9
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 3.0e-11 73.2 153 32.7
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 3.0e-11 73.2 145 31.0
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 3.0e-11 73.2 150 32.7
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 3.0e-11 73.2 122 35.2
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 3.9e-11 72.8 126 41.3
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 5.1e-11 72.4 95 38.9
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.7e-11 72.0 160 31.9
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 6.7e-11 72.0 136 37.5
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 8.8e-11 71.6 125 34.4
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.5e-10 70.9 129 32.6
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 4.4e-10 69.3 149 30.9
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 4.4e-10 69.3 149 30.9
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 5.7e-10 68.9 117 35.9
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 5.7e-10 68.9 159 35.2
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 7.4e-10 68.6 149 30.9
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 9.7e-10 68.2 117 32.5
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.2e-09 67.0 102 37.3
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.2e-09 67.0 125 31.2
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.8e-09 66.6 114 37.7
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 2.8e-09 66.6 108 30.6
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 2.8e-09 66.6 129 32.6
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 2.8e-09 66.6 109 37.6
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.7e-09 66.2 194 28.4
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 4.8e-09 65.9 119 33.6
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 4.8e-09 65.9 169 30.8
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.3e-09 65.5 188 30.9
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 6.3e-09 65.5 139 33.1
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 6.3e-09 65.5 119 36.1
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 8.2e-09 65.1 169 30.2
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 1.1e-08 64.7 193 28.5
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 3.1e-08 63.2 201 25.9
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 7.0e-08 62.0 149 30.2
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 7.0e-08 62.0 149 30.2
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 1.2e-07 61.2 149 28.9
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 2.0e-07 60.5 128 30.5
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 2.0e-07 60.5 128 30.5
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 2.6e-07 60.1 68 44.1
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 3.4e-07 59.7 197 24.4
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 4.5e-07 59.3 178 26.4
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 4.5e-07 59.3 178 26.4
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 5.9e-07 58.9 88 34.1
Sc07g0010080 Simmondsia chinensis HOM05D020218 ORTHO05D017274 5.9e-07 58.9 116 30.2
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-06 57.4 160 28.1


User provided reference genes

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