Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.1e-130 469.9 231 100.0
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 7.3e-58 228.0 258 51.2
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.3e-51 207.2 251 44.6
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.7e-51 206.8 261 47.1
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.7e-51 206.8 261 47.1
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 5.1e-51 205.3 246 47.2
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 6.6e-51 204.9 261 45.2
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 6.6e-51 204.9 255 47.1
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 8.6e-51 204.5 254 49.2
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.1e-50 204.1 259 47.5
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.1e-50 204.1 260 49.2
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.5e-50 203.8 254 49.2
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.9e-50 203.4 255 48.2
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 2.5e-50 203.0 259 46.3
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 3.3e-50 202.6 258 47.3
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 5.6e-50 201.8 260 48.1
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 7.3e-50 201.4 264 46.6
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 7.3e-50 201.4 260 47.7
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 9.5e-50 201.1 256 46.5
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 9.5e-50 201.1 262 44.3
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 9.5e-50 201.1 259 49.4
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-49 200.7 264 46.6
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.6e-49 200.3 254 48.4
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 2.1e-49 199.9 261 43.7
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 2.8e-49 199.5 227 48.9
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 2.8e-49 199.5 262 44.7
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 3.6e-49 199.1 261 44.1
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.1e-48 197.6 261 44.1
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.1e-48 197.6 255 47.1
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 1.8e-48 196.8 256 45.7
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.8e-48 196.8 258 45.7
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 2.4e-48 196.4 258 46.1
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 3.1e-48 196.1 257 45.1
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 3.1e-48 196.1 257 45.9
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.0e-48 195.7 253 46.6
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 4.0e-48 195.7 258 45.7
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 5.2e-48 195.3 251 44.2
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.2e-48 195.3 259 46.3
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.2e-48 195.3 259 47.5
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 5.2e-48 195.3 232 49.1
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.2e-47 194.1 261 43.7
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.5e-47 193.7 260 45.4
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.0e-47 193.4 261 43.7
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.6e-47 193.0 259 47.5
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.6e-47 193.0 257 45.9
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 3.4e-47 192.6 253 45.5
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 3.4e-47 192.6 261 46.4
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.4e-47 192.2 261 43.7
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 5.8e-47 191.8 253 45.1
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 5.8e-47 191.8 257 45.1
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 5.8e-47 191.8 259 45.6
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 9.9e-47 191.0 262 45.0
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 9.9e-47 191.0 261 47.5
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 1.3e-46 190.7 262 45.4
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-46 190.7 260 45.0
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.3e-46 190.7 257 44.0
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.7e-46 190.3 253 45.1
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.7e-46 190.3 251 45.8
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.2e-46 189.9 210 51.0
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.2e-46 189.9 207 50.2
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.2e-46 189.9 262 44.7
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.2e-46 189.9 264 43.6
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.2e-46 189.9 259 46.7
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 2.9e-46 189.5 261 45.2
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 2.9e-46 189.5 263 44.5
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 3.8e-46 189.1 263 43.7
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.9e-46 188.7 264 43.6
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 6.4e-46 188.3 261 45.2
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.1e-45 187.6 267 45.7
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.4e-45 187.2 266 45.1
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.9e-45 186.8 237 45.1
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.9e-45 186.8 226 46.5
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.9e-45 186.8 255 44.7
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.9e-45 186.8 229 47.2
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.4e-45 186.4 251 43.4
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 2.4e-45 186.4 260 43.5
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 3.2e-45 186.0 237 45.1
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 3.2e-45 186.0 253 46.2
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.2e-45 186.0 256 42.6
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 3.2e-45 186.0 267 45.7
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 3.2e-45 186.0 191 50.3
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.2e-45 186.0 265 43.8
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.2e-45 185.7 258 43.4
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 4.2e-45 185.7 225 47.1
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 4.2e-45 185.7 260 42.7
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 5.4e-45 185.3 256 41.4
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 7.1e-45 184.9 257 44.7
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 7.1e-45 184.9 250 44.4
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.2e-44 184.1 255 43.5
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.2e-44 184.1 216 47.2
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.2e-44 184.1 254 44.5
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.2e-44 184.1 256 41.4
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.2e-44 184.1 254 44.5
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.2e-44 184.1 228 46.1
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.6e-44 183.7 243 45.7
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.6e-44 183.7 253 43.5
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 2.1e-44 183.3 264 43.9
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.7e-44 183.0 254 42.1
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 4.6e-44 182.2 259 44.0
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 6.0e-44 181.8 262 42.7
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 6.0e-44 181.8 262 42.7
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 6.0e-44 181.8 255 42.4
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.3e-43 180.6 260 41.9
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.3e-43 180.6 251 42.6
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.7e-43 180.3 251 43.0
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.3e-43 179.9 196 50.5
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.0e-43 179.5 222 46.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 3.0e-43 179.5 253 42.3
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.9e-43 179.1 261 41.8
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 5.1e-43 178.7 238 46.2
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 5.1e-43 178.7 230 46.5
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 6.6e-43 178.3 222 45.5
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 8.7e-43 177.9 288 41.0
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.5e-42 177.2 190 48.4
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.5e-42 177.2 262 43.5
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.5e-42 177.2 261 41.8
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.9e-42 176.8 252 44.8
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 9.6e-42 174.5 188 51.1
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.7e-41 172.2 259 42.1
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 6.2e-41 171.8 250 44.4
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.8e-40 170.2 318 37.4
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 1.8e-40 170.2 228 45.2
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 3.1e-40 169.5 296 39.2
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 4.0e-40 169.1 202 43.6
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.2e-39 167.5 256 40.6
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 9.9e-39 164.5 269 39.4
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.3e-38 164.1 271 39.9
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.7e-38 163.7 218 42.2
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.2e-38 163.3 271 39.9
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.2e-38 163.3 134 58.2
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 3.8e-38 162.5 274 40.1
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.4e-37 158.7 232 45.7
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 4.6e-36 155.6 263 40.3
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 2.3e-35 153.3 191 42.4
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 8.7e-35 151.4 263 39.5
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.1e-34 151.0 264 38.3
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 3.3e-34 149.4 384 31.5
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 4.3e-34 149.1 288 34.7
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 7.3e-34 148.3 134 52.2
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.3e-33 147.5 181 44.8
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.4e-32 144.1 190 41.1
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.4e-32 143.3 264 34.8
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 6.9e-32 141.7 264 34.5
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 6.9e-32 141.7 234 38.0
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 9.9e-31 137.9 251 38.2
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.7e-30 137.1 267 34.8
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.9e-30 136.3 194 40.7
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 1.4e-29 134.0 250 38.0
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 9.3e-29 131.3 226 39.8
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.2e-28 131.0 131 45.8
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.9e-27 125.9 253 36.4
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.9e-27 125.9 268 34.3
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.5e-26 123.2 139 46.0
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 4.3e-26 122.5 163 42.3
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 7.4e-26 121.7 183 41.0
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.0e-23 113.6 209 34.0
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.6e-23 111.7 239 38.1
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 9.9e-23 111.3 93 60.2
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.2e-20 104.4 158 39.9
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 4.6e-20 102.4 94 58.5
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 5.1e-19 99.0 130 40.0
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.9e-18 97.1 189 37.0
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.6e-17 94.0 95 51.6
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.6e-17 94.0 172 39.0
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 6.2e-17 92.0 164 39.6
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 4.0e-16 89.4 160 38.1
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 7.6e-15 85.1 61 63.9
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.0e-14 84.7 103 43.7
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.3e-14 84.3 161 36.6
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.4e-13 80.9 83 54.2
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.2e-13 79.3 163 35.6
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 9.3e-13 78.2 76 48.7
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.1e-10 71.2 44 63.6
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 3.7e-09 66.2 49 65.3
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 3.7e-09 66.2 114 36.0
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.1e-08 64.7 53 66.0
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 8.5e-06 55.1 38 60.5


User provided reference genes

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