Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 2.4e-196 688.7 372 100.0
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 6.7e-146 521.2 348 79.3
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 3.1e-90 336.3 351 53.8
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 5.8e-89 332.0 344 55.5
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.3e-88 330.9 351 55.0
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.3e-88 330.9 350 54.3
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 5.1e-85 318.9 342 54.1
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 1.9e-84 317.0 346 52.3
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 7.3e-84 315.1 354 51.7
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 1.6e-83 313.9 351 53.3
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.4e-82 310.8 353 52.1
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 3.1e-82 309.7 344 52.0
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 8.9e-82 308.1 344 51.7
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 1.2e-81 307.8 355 52.4
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 2.0e-81 307.0 344 51.2
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 2.0e-81 307.0 355 52.4
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 9.9e-81 304.7 317 57.4
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 2.9e-80 303.1 338 51.2
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 2.9e-80 303.1 338 52.7
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 1.1e-79 301.2 372 50.8
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 1.4e-79 300.8 346 50.9
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 1.9e-79 300.4 373 49.3
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 1.9e-79 300.4 363 49.3
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 2.4e-79 300.1 318 58.2
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 3.2e-79 299.7 372 48.9
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 3.2e-79 299.7 335 52.2
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 5.4e-79 298.9 373 49.3
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 5.4e-79 298.9 323 54.2
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 7.1e-79 298.5 350 52.0
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 9.2e-79 298.1 362 49.7
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.2e-78 297.7 364 49.7
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 2.1e-78 297.0 336 52.1
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 2.7e-78 296.6 353 51.6
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 2.7e-78 296.6 324 52.8
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 3.5e-78 296.2 358 49.4
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 1.0e-77 294.7 348 51.1
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 1.3e-77 294.3 361 50.4
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 1.7e-77 293.9 365 48.2
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.7e-77 293.9 377 48.0
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 3.9e-77 292.7 329 53.8
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 1.1e-76 291.2 340 50.9
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 2.5e-76 290.0 331 52.0
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 1.2e-75 287.7 332 52.4
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 2.1e-75 287.0 328 52.7
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 2.1e-75 287.0 343 49.3
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 6.2e-75 285.4 334 53.0
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 1.1e-74 284.6 329 52.0
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 1.1e-74 284.6 325 52.0
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 3.1e-74 283.1 322 51.2
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 3.1e-74 283.1 354 49.2
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 9.0e-74 281.6 336 50.3
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 1.2e-73 281.2 351 48.7
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 2.0e-73 280.4 325 52.0
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 1.3e-72 277.7 353 50.7
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 8.4e-72 275.0 346 50.3
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 3.2e-71 273.1 343 49.3
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 4.2e-71 272.7 336 48.8
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 9.3e-71 271.6 338 48.5
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 1.2e-70 271.2 343 49.9
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 1.2e-70 271.2 348 50.0
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 2.1e-70 270.4 347 47.0
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 2.7e-70 270.0 333 49.2
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 4.6e-70 269.2 331 49.8
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 1.0e-69 268.1 368 46.7
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 1.0e-69 268.1 322 49.7
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 3.9e-69 266.2 343 48.1
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 6.6e-69 265.4 370 46.2
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 4.3e-68 262.7 355 48.2
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 7.3e-68 261.9 333 48.0
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 1.4e-66 257.7 301 52.8
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 1.2e-65 254.6 374 44.7
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 2.6e-65 253.4 361 46.3
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 2.6e-65 253.4 249 59.4
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 3.4e-65 253.1 349 47.6
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 1.3e-64 251.1 359 44.6
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 4.9e-64 249.2 353 47.6
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 4.9e-64 249.2 327 48.9
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 1.1e-63 248.1 355 45.9
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 1.9e-63 247.3 344 45.6
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 3.2e-63 246.5 344 45.6
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 1.8e-61 240.7 335 44.2
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 6.7e-61 238.8 343 43.1
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 4.3e-60 236.1 337 43.6
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 7.4e-60 235.3 333 45.9
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 1.7e-56 224.2 338 41.4
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 3.2e-55 219.9 325 43.4
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 4.2e-55 219.5 329 43.2
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 1.3e-53 214.5 385 40.5
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 4.8e-51 206.1 206 57.8
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 5.8e-49 199.1 373 37.8
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 1.0e-48 198.4 334 39.2
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.3e-48 198.0 241 49.0
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 3.2e-47 193.4 295 44.7
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 1.6e-46 191.0 262 45.8
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 1.6e-46 191.0 265 45.3
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 2.3e-45 187.2 383 36.6
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 1.1e-44 184.9 301 43.5
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 1.6e-43 181.0 343 39.7
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 2.8e-43 180.3 243 44.9
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 3.7e-43 179.9 261 44.4
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 1.4e-42 177.9 325 37.5
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 5.9e-41 172.6 209 48.8
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 6.5e-40 169.1 307 38.8
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 6.7e-37 159.1 239 42.7
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 2.2e-35 154.1 247 40.5
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 1.4e-34 151.4 281 38.8
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 1.4e-34 151.4 281 38.8
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 1.4e-34 151.4 281 38.8
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 1.8e-34 151.0 281 38.4
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 5.3e-34 149.4 281 38.8
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 6.9e-34 149.1 208 43.8
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 1.5e-33 147.9 288 35.8
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 2.6e-33 147.1 278 37.8
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 5.9e-33 146.0 256 36.3
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 7.7e-33 145.6 252 36.9
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 2.2e-32 144.1 294 35.4
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 2.9e-32 143.7 272 36.0
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 2.9e-32 143.7 278 34.5
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.1e-31 141.7 274 33.6
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 2.5e-31 140.6 236 36.9
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 3.2e-31 140.2 275 35.3
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 1.2e-30 138.3 266 35.3
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 6.1e-30 136.0 245 33.1
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 1.0e-29 135.2 250 33.2
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 2.3e-29 134.0 247 32.8
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 2.3e-29 134.0 247 32.8
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 3.9e-29 133.3 247 32.4
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 3.9e-29 133.3 276 33.7
CDE02G0066 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 4.4e-28 129.8 245 37.6
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 5.7e-28 129.4 276 33.0
PGSC0003DMG400021951 Solanum tuberosum HOM05D004919 ORTHO05D005994 5.2e-21 106.3 270 33.0
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 6.7e-21 105.9 266 31.2
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 6.7e-21 105.9 266 31.2
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 2.0e-20 104.4 201 31.8
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 7.0e-18 95.9 119 45.4
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 8.5e-16 89.0 189 29.6
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 2.5e-15 87.4 189 32.8
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 2.5e-15 87.4 189 32.8
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 4.2e-15 86.7 156 35.9
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 4.2e-15 86.7 180 33.9
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 5.5e-15 86.3 165 34.5
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 9.7e-12 75.5 118 38.1
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 9.7e-12 75.5 118 38.1
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 1.8e-10 71.2 154 32.5
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 1.8e-10 71.2 155 32.3
Manes.09G186700 Manihot esculenta HOM05D000592 ORTHO05D000900 3.1e-10 70.5 219 28.8
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 7.0e-10 69.3 154 31.8
CDE06G0447 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 2.9e-08 63.9 80 40.0
Actinidia30596 Actinidia chinensis HOM05D000592 ORTHO05D000900 1.5e-07 61.6 187 29.9
Rhsim12G0018500 Rhododendron simsii HOM05D000592 ORTHO05D000900 1.9e-07 61.2 199 27.1
Gohir.A11G117900 Gossypium hirsutum HOM05D000592 ORTHO05D000900 3.2e-07 60.5 197 25.4
Migut.K01041 Erythranthe guttata HOM05D000592 ORTHO05D000900 4.2e-07 60.1 64 43.8
Hma1.2p1_0602F.1_g187540 Hydrangea macrophylla HOM05D000592 ORTHO05D001485 4.2e-07 60.1 282 24.1
C01p41560 Brassica napus HOM05D000592 ORTHO05D001485 5.5e-07 59.7 99 33.3
BolC1t04110H Brassica oleracea HOM05D000592 ORTHO05D001485 5.5e-07 59.7 99 33.3
Hund18054 Selenicereus undatus HOM05D000592 ORTHO05D000900 5.5e-07 59.7 191 26.7
A01p32430 Brassica napus HOM05D000592 ORTHO05D001485 9.4e-07 58.9 99 34.3
BraA05t21480Z Brassica rapa HOM05D000592 ORTHO05D001485 1.2e-06 58.5 99 33.3
Gohir.D02G174800 Gossypium hirsutum HOM05D000592 ORTHO05D000900 1.2e-06 58.5 85 37.6
Gorai.004G085700 Gossypium raimondii HOM05D000592 ORTHO05D000900 1.2e-06 58.5 223 25.1
AL3G37110 Arabidopsis lyrata HOM05D000592 ORTHO05D001485 1.6e-06 58.2 99 33.3
A05p25950 Brassica napus HOM05D000592 ORTHO05D001485 1.6e-06 58.2 99 33.3
BraA01t03373Z Brassica rapa HOM05D000592 ORTHO05D001485 1.6e-06 58.2 99 33.3
Medtr5g006520 Medicago truncatula HOM05D000592 ORTHO05D001485 2.1e-06 57.8 106 30.2
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 2.7e-06 57.4 170 29.4
CDE02G0335 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 2.7e-06 57.4 106 33.0
TAR622G0278 Trochodendron aralioides HOM05D000592 ORTHO05D000900 2.7e-06 57.4 80 35.0
Zm00001eb135720 Zea mays HOM05D000592 ORTHO05D001485 2.7e-06 57.4 115 33.0
AT3G22790 Arabidopsis thaliana HOM05D000592 ORTHO05D001485 3.6e-06 57.0 99 32.3
Zm00001eb031290 Zea mays HOM05D000592 ORTHO05D001485 3.6e-06 57.0 115 34.8
Aa31LG9G2610 Aethionema arabicum HOM05D000592 ORTHO05D001485 4.7e-06 56.6 113 31.9
DCAR_012427 Daucus carota HOM05D000592 ORTHO05D000900 4.7e-06 56.6 209 25.4
FAN12G2177 Fragaria x ananassa HOM05D000592 ORTHO05D000900 4.7e-06 56.6 240 22.1
RcHm_v2.0_Chr4g0429101 Rosa chinensis HOM05D000592 ORTHO05D000900 4.7e-06 56.6 224 22.3
Sed0008526 Sechium edule HOM05D000592 ORTHO05D001485 6.1e-06 56.2 107 31.8
AUR62033645 Chenopodium quinoa HOM05D000592 ORTHO05D001485 8.0e-06 55.8 202 27.2
FvH4_4g22860 Fragaria vesca HOM05D000592 ORTHO05D000900 8.0e-06 55.8 240 22.1
Glyma.11G006800 Glycine max HOM05D000592 ORTHO05D001485 8.0e-06 55.8 86 32.6
MD16G1128900 Malus domestica HOM05D000592 ORTHO05D000900 8.0e-06 55.8 202 25.7


User provided reference genes

Program Settings