Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 2.6e-247 858.2 419 100.0
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 2.2e-206 722.2 417 85.6
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.2e-194 683.3 420 78.8
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 1.1e-192 676.8 420 77.4
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 2.7e-191 672.2 420 77.9
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.0e-190 670.2 420 76.4
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 2.9e-190 668.7 420 76.7
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 4.2e-189 664.8 420 76.4
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 4.2e-189 664.8 420 76.7
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 6.8e-187 657.5 420 74.5
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 9.8e-186 653.7 420 74.8
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 9.1e-184 647.1 420 72.9
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 2.9e-182 642.1 420 73.1
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.8e-182 641.7 420 73.1
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 6.5e-182 641.0 420 71.9
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 6.5e-182 641.0 420 72.4
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 1.1e-181 640.2 420 72.4
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 2.1e-180 636.0 420 73.1
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 2.1e-180 636.0 420 72.9
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.7e-180 634.8 420 72.4
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 4.7e-180 634.8 421 73.9
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 8.0e-180 634.0 419 72.3
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 1.0e-179 633.6 420 71.9
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.0e-179 633.6 420 70.7
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.8e-179 632.9 420 71.9
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 3.0e-179 632.1 420 71.4
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.2e-178 630.2 420 70.2
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.5e-178 629.8 420 70.7
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 2.6e-178 629.0 420 71.2
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 7.5e-178 627.5 420 71.4
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.7e-177 626.3 420 71.4
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 2.2e-177 625.9 420 71.9
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 8.3e-177 624.0 420 72.4
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 1.1e-176 623.6 420 70.7
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 2.4e-176 622.5 420 71.0
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 7.0e-176 620.9 420 71.7
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 2.0e-175 619.4 420 71.4
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.5e-175 618.2 420 70.2
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 4.5e-175 618.2 420 71.0
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.0e-174 617.1 420 71.2
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 1.7e-174 616.3 420 69.0
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.9e-174 615.5 420 71.0
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.9e-174 615.5 420 71.0
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.9e-173 612.8 420 70.0
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.3e-173 612.1 420 70.5
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.3e-173 612.1 420 69.5
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 4.3e-173 611.7 420 68.8
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 7.3e-173 610.9 420 69.8
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 2.8e-172 609.0 421 69.4
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 4.7e-172 608.2 420 68.6
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 4.7e-172 608.2 420 70.0
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 8.0e-172 607.4 420 69.0
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 8.0e-172 607.4 408 71.8
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.0e-171 607.1 420 69.3
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 3.0e-171 605.5 420 68.1
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 3.0e-171 605.5 405 72.3
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 8.9e-171 604.0 421 70.5
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 8.9e-171 604.0 420 67.9
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.0e-170 602.8 420 68.1
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.0e-170 602.8 420 68.6
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 4.4e-170 601.7 420 67.4
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 5.7e-170 601.3 420 69.0
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 3.7e-169 598.6 420 67.1
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 4.9e-169 598.2 419 67.3
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 8.3e-169 597.4 420 68.6
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 3.2e-168 595.5 420 67.4
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 5.4e-168 594.7 421 66.7
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 7.0e-168 594.3 420 68.1
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 7.0e-168 594.3 420 66.7
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 9.2e-168 594.0 423 69.5
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.2e-167 593.6 420 67.1
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 2.7e-167 592.4 420 67.9
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.3e-166 590.1 425 65.6
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 1.7e-166 589.7 420 67.9
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 2.3e-166 589.3 417 68.1
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 8.6e-166 587.4 423 67.1
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.5e-165 586.6 425 66.8
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 4.3e-165 585.1 420 64.5
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 5.6e-165 584.7 425 66.1
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 2.1e-164 582.8 417 65.9
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 4.7e-164 581.6 420 64.8
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.2e-162 577.0 421 66.0
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.0e-162 576.2 421 65.1
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 2.2e-161 572.8 425 66.1
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 3.7e-161 572.0 422 65.6
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.1e-160 570.5 420 66.0
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 1.9e-160 569.7 419 65.4
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 5.4e-160 568.2 424 65.8
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 3.5e-159 565.5 420 65.5
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.3e-158 563.5 420 66.2
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.7e-158 563.1 420 65.2
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 3.9e-158 562.0 420 62.1
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 2.0e-154 549.7 420 63.1
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 7.5e-154 547.7 420 63.6
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 2.9e-153 545.8 377 69.2
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 1.1e-152 543.9 420 62.4
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 5.4e-152 541.6 420 62.4
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 3.5e-151 538.9 420 64.5
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 6.0e-151 538.1 420 62.1
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 6.0e-151 538.1 420 62.9
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 1.0e-150 537.3 420 62.1
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 2.3e-150 536.2 420 61.9
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 2.3e-150 536.2 420 61.9
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 3.0e-150 535.8 421 62.5
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 3.9e-150 535.4 421 63.2
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 3.9e-150 535.4 420 63.3
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.5e-149 533.5 420 64.0
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 1.2e-148 530.4 419 60.4
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 4.1e-144 515.4 420 59.0
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 6.0e-143 511.5 421 57.5
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 2.3e-142 509.6 419 58.5
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 3.8e-137 492.3 425 57.6
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 6.9e-131 471.5 421 55.1
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 2.1e-127 459.9 357 65.0
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 2.0e-122 443.4 404 53.7
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 3.2e-120 436.0 251 82.9
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 8.7e-118 427.9 426 51.4
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.5e-114 417.2 396 55.1
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.5e-114 417.2 425 50.1
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 9.7e-109 397.9 410 46.8
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 9.7e-109 397.9 282 67.0
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.6e-103 379.4 422 47.6
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.3e-92 344.4 302 57.0
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 8.2e-92 341.7 411 44.3
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.2e-90 337.8 359 45.1
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 3.7e-84 316.2 299 51.5
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 9.7e-77 291.6 248 54.8
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 2.2e-73 280.4 317 43.5
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.7e-63 246.1 266 50.8
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 1.8e-54 217.6 134 72.4
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 8.0e-47 192.2 132 71.2
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 9.2e-43 178.7 161 55.9
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.2e-35 153.7 99 71.7
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 5.6e-32 142.9 91 73.6
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.7e-25 121.3 74 74.3
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 3.9e-25 120.2 71 76.1
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 3.3e-24 117.1 100 57.0
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-23 115.2 71 74.6
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 1.4e-22 111.7 104 50.0
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 1.8e-22 111.3 71 73.2
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.8e-22 111.3 71 73.2
SalBow5G1330 Salvia bowleyana HOM05D003488 ORTHO05D004214 1.1e-08 65.5 287 24.4
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.3e-07 62.0 238 25.2
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 2.1e-07 61.2 238 25.2
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 2.1e-07 61.2 238 25.2
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 6.2e-07 59.7 242 28.1
Migut.E01649 Erythranthe guttata HOM05D005930 ORTHO05D003423 8.1e-07 59.3 85 35.3
Actinidia37828 Actinidia chinensis HOM05D000312 ORTHO05D000493 1.4e-06 58.5 105 33.3
RcHm_v2.0_Chr2g0160731 Rosa chinensis HOM05D008065 ORTHO05D010197 1.8e-06 58.2 252 23.8
Migut.E00919 Erythranthe guttata HOM05D005930 ORTHO05D003423 2.4e-06 57.8 85 34.1
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 2.4e-06 57.8 61 52.5


User provided reference genes

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