Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 3.2e-130 468.4 232 100.0
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 4.1e-109 398.3 230 84.3
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 1.7e-78 296.6 228 67.5
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 5.6e-74 281.6 198 68.7
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.1e-73 279.6 209 63.6
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.8e-72 276.6 216 63.0
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.3e-72 276.2 214 63.6
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.2e-71 273.9 223 59.6
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.5e-71 273.5 199 66.3
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.0e-71 273.1 211 61.6
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 3.4e-71 272.3 197 66.0
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 4.4e-71 271.9 219 61.6
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 4.4e-71 271.9 216 60.2
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 4.4e-71 271.9 214 63.6
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 5.8e-71 271.6 196 63.8
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 5.8e-71 271.6 198 61.6
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 7.5e-71 271.2 210 60.0
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 9.9e-71 270.8 217 60.4
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.9e-70 269.2 223 59.2
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.9e-70 269.2 213 63.4
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 6.4e-70 268.1 219 59.8
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 8.3e-70 267.7 196 64.8
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 1.9e-69 266.5 209 65.1
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 2.4e-69 266.2 210 63.3
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.4e-69 266.2 197 64.5
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 2.4e-69 266.2 207 63.8
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 3.2e-69 265.8 204 65.2
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 5.4e-69 265.0 221 59.7
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 5.4e-69 265.0 212 59.0
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 7.1e-69 264.6 222 58.6
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 7.1e-69 264.6 209 64.1
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 1.2e-68 263.8 217 62.7
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.1e-68 263.1 196 62.8
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 2.1e-68 263.1 219 62.1
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 2.7e-68 262.7 206 64.1
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 2.7e-68 262.7 213 62.4
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 2.7e-68 262.7 213 59.6
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 3.5e-68 262.3 218 59.6
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 3.5e-68 262.3 223 58.3
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 7.8e-68 261.2 212 58.0
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 7.8e-68 261.2 198 63.1
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 1.3e-67 260.4 217 57.6
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 1.7e-67 260.0 215 60.5
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 2.3e-67 259.6 222 60.4
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.3e-67 259.6 214 61.2
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 3.0e-67 259.2 213 62.0
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 3.9e-67 258.8 212 62.3
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 5.1e-67 258.5 215 59.5
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 5.1e-67 258.5 215 60.0
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 8.6e-67 257.7 214 62.1
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 9.5e-66 254.2 215 59.5
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 3.6e-65 252.3 214 57.9
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 4.7e-65 251.9 198 61.1
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 6.2e-65 251.5 198 60.1
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.8e-64 250.0 199 59.3
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 1.8e-64 250.0 226 54.9
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 4.0e-64 248.8 228 55.7
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 6.8e-64 248.1 194 60.8
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 8.9e-64 247.7 209 59.3
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 1.2e-63 247.3 215 55.8
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.2e-63 247.3 213 57.3
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 1.5e-63 246.9 194 61.3
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.0e-63 246.5 222 58.1
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.0e-63 246.5 222 58.1
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 2.6e-63 246.1 211 56.9
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 3.4e-63 245.7 199 59.3
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 3.4e-63 245.7 206 58.3
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 3.4e-63 245.7 220 60.0
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 1.3e-62 243.8 214 55.6
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 1.7e-62 243.4 214 55.6
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.7e-62 243.4 208 57.2
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.7e-62 243.4 216 55.6
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.7e-62 243.4 215 59.1
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.7e-62 243.4 216 55.1
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 2.9e-62 242.7 215 56.7
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 3.8e-62 242.3 248 52.8
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 4.9e-62 241.9 215 58.6
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 4.9e-62 241.9 213 56.3
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.4e-62 241.5 223 55.6
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.4e-62 241.5 223 55.6
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 1.1e-61 240.7 213 57.7
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.4e-61 240.4 213 57.7
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.9e-61 240.0 217 55.8
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 2.4e-61 239.6 216 54.6
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 3.2e-61 239.2 215 53.5
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 4.1e-61 238.8 202 55.0
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 7.1e-61 238.0 208 55.3
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 9.2e-61 237.7 217 56.2
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 2.7e-60 236.1 211 55.9
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.7e-60 236.1 222 55.9
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 2.7e-60 236.1 208 54.3
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 4.6e-60 235.3 217 53.5
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 7.8e-60 234.6 208 54.8
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 7.8e-60 234.6 194 57.7
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 1.7e-59 233.4 212 53.8
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 3.0e-59 232.6 199 56.8
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 5.1e-59 231.9 211 55.5
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.1e-58 230.7 214 52.3
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.5e-58 230.3 197 57.4
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 1.5e-58 230.3 197 57.4
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.9e-58 229.9 208 54.8
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 1.9e-58 229.9 170 66.5
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.5e-58 229.6 199 55.3
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 3.3e-58 229.2 197 56.9
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 4.3e-58 228.8 210 54.8
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 5.6e-58 228.4 202 55.9
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 9.6e-58 227.6 197 56.3
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 9.6e-58 227.6 194 56.2
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.2e-57 227.3 218 51.8
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 3.6e-57 225.7 219 50.2
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 6.2e-57 224.9 201 54.7
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.8e-56 223.4 194 55.2
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 4.0e-56 222.2 208 53.4
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 4.0e-56 222.2 216 51.9
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 3.4e-55 219.2 242 48.8
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 3.4e-55 219.2 216 52.3
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 1.7e-54 216.9 213 54.5
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 2.2e-54 216.5 213 50.2
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 3.8e-54 215.7 197 55.8
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 4.9e-54 215.3 213 51.6
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.9e-53 213.4 197 54.8
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 4.2e-53 212.2 208 52.4
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 4.2e-53 212.2 211 52.1
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 4.2e-53 212.2 212 51.9
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 4.2e-53 212.2 197 54.3
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 5.4e-53 211.8 213 52.1
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 9.3e-53 211.1 197 53.8
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 9.3e-53 211.1 198 54.0
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 9.3e-53 211.1 199 56.8
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 1.2e-52 210.7 197 53.8
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.6e-52 210.3 208 51.9
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.6e-52 210.3 213 52.1
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 2.1e-52 209.9 197 53.3
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 6.0e-52 208.4 213 52.1
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 6.0e-52 208.4 213 52.1
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.9e-50 203.4 232 48.3
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.8e-49 199.5 156 62.2
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 3.6e-49 199.1 231 48.1
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 8.1e-49 198.0 220 49.1
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 5.3e-48 195.3 188 52.7
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.3e-46 190.7 175 56.6
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 5.4e-45 185.3 136 68.4
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.2e-44 184.1 204 49.5
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 1.6e-44 183.7 216 41.2
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.4e-40 170.6 132 62.9
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 3.8e-38 162.5 222 40.1
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 5.5e-37 158.7 104 72.1
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 9.3e-37 157.9 157 52.9
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 2.1e-36 156.8 148 52.7
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 1.5e-34 150.6 189 43.4
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 5.6e-34 148.7 100 68.0
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 5.8e-31 138.7 130 50.0
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 2.2e-30 136.7 159 49.1
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 2.9e-30 136.3 175 44.6
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 1.4e-29 134.0 105 60.0
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 1.4e-29 134.0 101 63.4
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.2e-28 131.0 135 50.4
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 3.7e-25 119.4 96 59.4
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 6.3e-25 118.6 117 50.4
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 1.4e-24 117.5 150 40.0
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 2.0e-23 113.6 216 31.5
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 6.5e-22 108.6 104 51.0
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 4.6e-20 102.4 111 47.7
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.0e-19 101.3 111 46.8
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 1.4e-19 100.9 123 47.2
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 3.9e-19 99.4 100 50.0
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 6.7e-19 98.6 67 64.2
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.9e-18 97.1 70 67.1
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 5.7e-18 95.5 103 48.5
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 1.7e-17 94.0 132 39.4
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 6.3e-17 92.0 83 54.2
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 1.4e-16 90.9 102 46.1
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-14 84.3 82 50.0
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.1e-13 81.3 55 61.8
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 3.2e-13 79.7 86 46.5
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 3.9e-11 72.8 76 46.1
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 2.2e-09 67.0 61 50.8
CDE02G3279 Ceratophyllum demersum HOM05D000901 ORTHO05D128872 4.1e-08 62.8 36 69.4


User provided reference genes

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