Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 1.2e-70 269.6 131 100.0
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 1.4e-58 229.6 131 81.7
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 5.1e-56 221.1 129 79.8
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 1.9e-55 219.2 131 78.6
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 8.1e-54 213.8 128 78.1
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.8e-53 212.6 130 75.4
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.8e-53 212.6 130 75.4
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 6.8e-53 210.7 130 76.9
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 2.6e-52 208.8 124 78.2
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 2.6e-52 208.8 124 78.2
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 3.4e-52 208.4 124 77.4
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 3.4e-52 208.4 124 77.4
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 3.4e-52 208.4 125 78.4
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 4.4e-52 208.0 129 74.4
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 5.8e-52 207.6 124 78.2
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 7.6e-52 207.2 124 75.8
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 7.6e-52 207.2 125 77.6
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 77.4
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 76.6
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 76.6
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 76.6
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 76.6
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 131 76.3
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 131 76.3
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.9e-51 205.3 127 75.6
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 2.9e-51 205.3 124 75.8
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.9e-51 205.3 129 75.2
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 2.9e-51 205.3 128 74.2
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 3.7e-51 204.9 130 76.2
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 3.7e-51 204.9 129 73.6
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 4.9e-51 204.5 124 76.6
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 4.9e-51 204.5 124 75.8
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 4.9e-51 204.5 127 75.6
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 6.4e-51 204.1 129 74.4
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 6.4e-51 204.1 129 76.0
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 8.4e-51 203.8 124 75.8
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 8.4e-51 203.8 124 75.8
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 8.4e-51 203.8 124 76.6
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 1.1e-50 203.4 130 73.8
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.1e-50 203.4 124 76.6
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.9e-50 202.6 124 75.0
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 2.4e-50 202.2 125 74.4
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 3.2e-50 201.8 127 74.0
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.2e-50 201.8 124 75.0
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 4.1e-50 201.4 128 73.4
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 4.1e-50 201.4 130 72.3
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 7.1e-50 200.7 129 72.9
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 9.2e-50 200.3 128 73.4
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 9.2e-50 200.3 130 72.3
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 1.6e-49 199.5 126 73.0
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.6e-49 199.5 124 73.4
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 2.1e-49 199.1 124 74.2
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.7e-49 198.7 129 72.1
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 2.7e-49 198.7 129 72.1
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.7e-49 198.7 124 73.4
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 3.5e-49 198.4 129 72.9
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.5e-49 198.4 124 74.2
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 3.5e-49 198.4 128 74.2
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 4.6e-49 198.0 124 73.4
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 7.8e-49 197.2 129 71.3
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 1.0e-48 196.8 118 75.4
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 1.0e-48 196.8 130 71.5
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.3e-48 196.4 129 72.1
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 1.3e-48 196.4 129 71.3
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.3e-48 196.4 129 72.1
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.7e-48 196.1 128 72.7
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.3e-48 195.7 125 72.8
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 2.3e-48 195.7 129 71.3
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.3e-48 195.7 129 71.3
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 3.0e-48 195.3 130 70.8
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 3.9e-48 194.9 124 72.6
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 3.9e-48 194.9 129 71.3
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.1e-48 194.5 125 72.0
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 5.1e-48 194.5 129 71.3
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 6.6e-48 194.1 130 70.0
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 6.6e-48 194.1 124 72.6
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 6.6e-48 194.1 124 72.6
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.1e-47 193.4 118 74.6
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.1e-47 193.4 124 69.4
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.5e-47 193.0 124 71.8
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.5e-47 193.0 129 70.5
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 1.9e-47 192.6 129 69.0
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 2.5e-47 192.2 124 73.4
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 2.5e-47 192.2 124 71.0
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.5e-47 192.2 124 71.8
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 3.3e-47 191.8 124 71.0
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 3.3e-47 191.8 126 70.6
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 7.3e-47 190.7 124 69.4
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 8.1e-46 187.2 124 69.4
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 8.1e-46 187.2 129 66.7
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 1.8e-45 186.0 126 69.8
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 1.8e-45 186.0 126 69.8
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 2.4e-45 185.7 126 69.8
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 3.1e-45 185.3 126 69.8
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 3.1e-45 185.3 126 69.0
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 5.2e-45 184.5 126 69.8
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 5.2e-45 184.5 126 69.8
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 5.2e-45 184.5 126 69.8
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 6.8e-45 184.1 124 72.6
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 6.8e-45 184.1 129 65.1
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 8.9e-45 183.7 130 65.4
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.2e-44 183.3 126 69.0
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 1.2e-44 183.3 126 69.0
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.2e-44 183.3 126 69.0
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.5e-44 183.0 125 68.8
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 2.6e-44 182.2 125 69.6
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.7e-43 179.5 129 65.9
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 2.9e-43 178.7 127 68.5
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 2.9e-43 178.7 118 70.3
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 1.9e-42 176.0 125 69.6
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 9.3e-42 173.7 96 83.3
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.2e-41 173.3 172 53.5
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 2.3e-40 169.1 109 74.3
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.1e-39 166.8 104 74.0
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.2e-34 148.3 82 85.4
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.3e-32 143.3 82 78.0
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 2.3e-32 142.5 109 65.1
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 1.1e-31 140.2 84 78.6
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 5.6e-31 137.9 81 82.7
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 4.8e-30 134.8 82 76.8
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 1.3e-24 116.7 88 63.6
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 5.1e-24 114.8 97 58.8
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.3e-23 112.1 59 91.5
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 3.3e-23 112.1 89 62.9
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 6.9e-21 104.4 129 46.5
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 9.0e-21 104.0 75 73.3
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 4.5e-20 101.7 68 69.1
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 4.9e-19 98.2 68 69.1
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 1.1e-15 87.0 81 51.9
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 1.5e-15 86.7 82 48.8
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 6.3e-14 81.3 48 77.1
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 3.1e-13 79.0 59 61.0
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.7e-11 73.2 114 44.7
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.1e-09 66.2 90 41.1
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.3e-08 63.5 55 63.6
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 3.3e-07 58.9 55 60.0
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 3.3e-07 58.9 55 61.8
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 5.7e-07 58.2 36 69.4
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 5.7e-07 58.2 55 61.8


User provided reference genes

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