Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.4e-240 835.9 423 100.0
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.8e-150 536.6 421 63.7
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 2.4e-147 526.2 420 63.3
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 7.1e-144 514.6 421 62.5
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 1.8e-142 510.0 420 61.7
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 4.6e-135 485.3 419 58.2
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 6.7e-134 481.5 388 62.6
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 2.2e-132 476.5 423 58.2
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 6.3e-132 474.9 372 63.4
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 1.4e-131 473.8 419 57.3
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 2.6e-130 469.5 420 56.0
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 4.5e-130 468.8 422 56.2
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 2.2e-129 466.5 421 56.1
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 3.2e-128 462.6 415 55.4
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 5.5e-128 461.8 425 55.5
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 1.2e-127 460.7 423 55.6
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.2e-127 460.7 426 56.3
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 4.7e-127 458.8 423 55.6
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 4.7e-127 458.8 423 55.3
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.8e-124 449.5 423 54.6
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 9.1e-123 444.5 423 54.1
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 8.5e-121 438.0 424 52.6
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 7.2e-120 434.9 423 53.4
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 6.1e-119 431.8 425 51.5
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.4e-118 430.6 423 53.2
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.8e-118 430.3 424 52.8
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 5.2e-118 428.7 424 52.8
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 6.7e-118 428.3 424 51.9
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 1.4e-115 420.6 370 55.9
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 4.1e-115 419.1 419 50.6
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 5.3e-115 418.7 424 50.9
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 2.0e-114 416.8 421 52.5
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 2.0e-114 416.8 424 52.8
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 3.5e-114 416.0 423 50.4
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.9e-114 415.2 424 52.6
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 3.8e-113 412.5 425 51.5
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 8.5e-113 411.4 445 50.8
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 1.9e-112 410.2 425 50.6
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 5.5e-112 408.7 429 52.7
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 1.2e-111 407.5 424 50.9
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 2.7e-111 406.4 362 56.9
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 8.0e-111 404.8 463 46.7
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 1.0e-110 404.4 423 48.9
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 1.4e-110 404.1 392 54.6
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 5.2e-110 402.1 430 49.3
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 1.5e-109 400.6 398 51.0
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 6.3e-108 395.2 424 50.5
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 2.4e-107 393.3 430 52.1
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.0e-106 390.2 424 49.1
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 1.7e-105 387.1 424 48.8
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 2.2e-105 386.7 433 50.8
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 3.8e-105 386.0 425 47.1
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 3.8e-105 386.0 423 46.8
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 7.2e-104 381.7 425 47.8
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.2e-103 380.9 425 47.5
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.6e-103 380.6 425 47.5
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.1e-103 380.2 424 47.6
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 3.6e-103 379.4 424 46.9
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 4.7e-103 379.0 412 48.3
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.0e-103 378.3 421 47.5
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 6.8e-102 375.2 425 47.1
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 6.8e-102 375.2 420 46.2
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 6.8e-102 375.2 429 47.6
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 1.2e-101 374.4 422 47.2
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 2.0e-101 373.6 391 48.8
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.4e-101 372.9 425 46.6
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 5.7e-101 372.1 375 49.9
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.7e-100 370.5 420 48.8
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.7e-100 370.5 391 50.1
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.2e-100 370.2 399 51.6
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 2.2e-100 370.2 421 47.3
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 4.8e-100 369.0 370 51.9
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 6.3e-100 368.6 422 46.7
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 1.8e-99 367.1 426 47.4
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 4.1e-99 365.9 423 46.8
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.3e-97 360.9 460 46.1
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 1.9e-96 357.1 421 46.1
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 2.5e-96 356.7 421 47.7
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 3.3e-96 356.3 423 44.9
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 5.5e-96 355.5 387 48.6
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.5e-96 354.8 419 49.4
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 1.2e-95 354.4 425 44.9
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 4.7e-95 352.4 425 44.7
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 4.7e-95 352.4 419 46.3
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 4.7e-95 352.4 464 45.3
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 8.0e-95 351.7 419 45.3
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.0e-94 351.3 419 47.0
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 1.4e-94 350.9 416 45.9
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 3.0e-94 349.7 419 46.8
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 3.0e-94 349.7 427 45.4
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 5.2e-94 349.0 424 46.5
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.0e-93 347.1 424 46.2
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 8.3e-92 341.7 432 44.9
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 7.0e-91 338.6 430 43.0
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 1.6e-90 337.4 426 42.7
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 2.7e-90 336.7 423 43.5
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 2.3e-89 333.6 428 43.2
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 2.3e-89 333.6 428 42.5
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 6.8e-86 322.0 425 42.8
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 2.4e-83 313.5 419 43.7
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 2.0e-82 310.5 405 44.2
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 1.7e-81 307.4 421 41.1
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 1.1e-80 304.7 330 47.0
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 1.9e-80 303.9 423 42.8
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 1.4e-75 287.7 423 39.7
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.9e-72 277.3 417 39.1
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 2.5e-72 276.9 404 41.1
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.1e-71 273.9 422 38.4
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 4.0e-70 269.6 372 39.2
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.5e-69 267.7 356 42.4
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 2.4e-67 260.4 352 38.9
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 5.8e-61 239.2 336 44.9
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 7.6e-61 238.8 208 56.7
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 2.9e-60 236.9 254 52.8
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 2.4e-59 233.8 428 35.0
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.5e-56 224.6 208 55.3
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 1.9e-51 207.6 195 49.2
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 5.1e-49 199.5 432 32.2
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 4.3e-48 196.4 392 34.4
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 2.8e-47 193.7 431 31.6
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 1.3e-44 184.9 436 31.4
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.6e-42 177.9 177 52.5
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 5.1e-41 172.9 338 32.5
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 4.3e-40 169.9 440 30.9
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 1.1e-38 165.2 150 53.3
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 3.8e-36 156.8 509 27.7
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 6.4e-36 156.0 428 30.4
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 4.2e-35 153.3 427 28.1
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.8e-33 147.9 399 29.1
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 4.3e-32 143.3 434 28.3
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 9.3e-27 125.6 212 36.3
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 3.1e-22 110.5 287 30.7
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-20 104.8 463 24.8
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 4.3e-16 90.1 63 60.3
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 2.2e-15 87.8 76 50.0
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.2e-13 82.0 239 29.7
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 7.7e-13 79.3 85 47.1
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.4e-09 68.6 59 59.3
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 1.4e-09 68.6 62 48.4
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 2.0e-08 64.7 96 37.5
FAN16G3589 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.4e-06 57.8 97 39.2
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 3.1e-06 57.4 55 50.9


User provided reference genes

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