Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013865 Daucus carota HOM05D007355 ORTHO05D009343 2.4e-58 228.8 129 100.0
DCAR_017465 Daucus carota HOM05D007355 ORTHO05D009343 2.5e-31 139.0 135 57.8
Sabra05G0184200 Salix brachista HOM05D007355 ORTHO05D009343 1.4e-21 106.7 130 53.1
Potri.005G238400 Populus trichocarpa HOM05D007355 ORTHO05D009343 2.6e-20 102.4 129 50.4
CiPaw.08G065900 Carya illinoinensis HOM05D007355 ORTHO05D009343 3.7e-19 98.6 138 48.6
Gohir.D05G189650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 4.9e-19 98.2 129 48.8
Gorai.009G194900 Gossypium raimondii HOM05D007355 ORTHO05D009343 4.9e-19 98.2 129 48.8
Hma1.2p1_0638F.1_g193820 Hydrangea macrophylla HOM05D007355 ORTHO05D009343 6.4e-19 97.8 125 49.6
Thecc.08G043500 Theobroma cacao HOM05D007355 ORTHO05D009343 6.4e-19 97.8 131 47.3
PGSC0003DMG400009860 Solanum tuberosum HOM05D007355 ORTHO05D009343 2.4e-18 95.9 131 51.1
COL.COLO4_26156 Corchorus olitorius HOM05D007355 ORTHO05D009343 5.4e-18 94.7 127 44.1
Manes.05G148200 Manihot esculenta HOM05D007355 ORTHO05D009343 5.4e-18 94.7 146 45.2
Solyc04g081380.1 Solanum lycopersicum HOM05D007355 ORTHO05D009343 5.4e-18 94.7 131 48.9
Dinv39511 Davidia involucrata HOM05D007355 ORTHO05D009343 9.2e-18 94.0 129 47.3
TAR625G0791 Trochodendron aralioides HOM05D007355 ORTHO05D009343 9.2e-18 94.0 129 48.8
Actinidia37930 Actinidia chinensis HOM05D007355 ORTHO05D009343 1.6e-17 93.2 114 51.8
Lalb_Chr14g0369841 Lupinus albus HOM05D007355 ORTHO05D009343 1.6e-17 93.2 135 46.7
Gohir.A05G186732 Gossypium hirsutum HOM05D007355 ORTHO05D009343 3.5e-17 92.0 129 47.3
QL02p011487 Quercus lobata HOM05D007355 ORTHO05D009343 3.5e-17 92.0 131 51.1
Manes.18G014200 Manihot esculenta HOM05D007355 ORTHO05D009343 1.7e-16 89.7 132 42.4
Sed0019478 Sechium edule HOM05D007355 ORTHO05D009343 1.7e-16 89.7 99 55.6
Nn5g30158 Nelumbo nucifera HOM05D007355 ORTHO05D009343 6.6e-16 87.8 127 45.7
Peaxi162Scf00400g00042 Petunia axillaris HOM05D007355 ORTHO05D009343 2.5e-15 85.9 131 41.2
FAN20G0162 Fragaria x ananassa HOM05D007355 ORTHO05D009343 3.3e-15 85.5 110 48.2
Glyma.06G024800 Glycine max HOM05D007355 ORTHO05D009343 4.3e-15 85.1 126 40.5
Gohir.A06G004700 Gossypium hirsutum HOM05D007355 ORTHO05D009343 7.3e-15 84.3 123 48.0
Lj5g0016063 Lotus japonicus HOM05D007355 ORTHO05D009343 7.3e-15 84.3 131 45.0
PGR083G2600 Punica granatum HOM05D007355 ORTHO05D009343 7.3e-15 84.3 120 50.0
Gohir.D06G000500 Gossypium hirsutum HOM05D007355 ORTHO05D009343 9.5e-15 84.0 123 48.0
Gorai.010G004900 Gossypium raimondii HOM05D007355 ORTHO05D009343 9.5e-15 84.0 123 48.0
ClCG05G018320 Citrullus lanatus HOM05D007355 ORTHO05D009343 1.2e-14 83.6 93 53.8
CsaV3_3G045820 Cucumis sativus L. HOM05D007355 ORTHO05D009343 1.6e-14 83.2 98 52.0
Duzib093G0416 Durio zibethinus HOM05D007355 ORTHO05D009343 1.6e-14 83.2 93 53.8
Phvul.009G016500 Phaseolus vulgaris HOM05D007355 ORTHO05D009343 1.6e-14 83.2 123 42.3
FAN15G2202 Fragaria x ananassa HOM05D007355 ORTHO05D009343 3.6e-14 82.0 112 47.3
FAN27G0012 Fragaria x ananassa HOM05D007355 ORTHO05D009343 3.6e-14 82.0 112 47.3
arahy.Tifrunner.gnm1.ann1.Y2NNQI Arachis hypogaea HOM05D007355 ORTHO05D009343 8.0e-14 80.9 101 48.5
VMungo1309G0669 Vigna mungo HOM05D007355 ORTHO05D009343 8.0e-14 80.9 119 43.7
Ciclev10003277m.g Citrus clementina HOM05D007355 ORTHO05D009343 1.1e-13 80.5 89 52.8
CiPaw.07G150900 Carya illinoinensis HOM05D007355 ORTHO05D009343 1.4e-13 80.1 110 45.5
Nn1g05885 Nelumbo nucifera HOM05D007355 ORTHO05D009343 1.4e-13 80.1 128 43.8
Glyma.04G024700 Glycine max HOM05D007355 ORTHO05D009343 1.8e-13 79.7 97 44.3
arahy.Tifrunner.gnm1.ann1.PADY8Y Arachis hypogaea HOM05D007355 ORTHO05D009343 6.8e-13 77.8 103 46.6
Aqoxy5G01778 Aquilegia oxysepala HOM05D007355 ORTHO05D009343 8.9e-13 77.4 135 44.4
Cpa.g.sc26.34 Carica papaya HOM05D007355 ORTHO05D009343 2.0e-12 76.3 126 42.9
TPR.G26402 Trifolium pratense HOM05D007355 ORTHO05D009343 2.6e-12 75.9 104 50.0
Haze_22626 Corylus avellana HOM05D007355 ORTHO05D009343 3.4e-12 75.5 96 50.0
CSS0013130 Camellia sinensis var. sinensis HOM05D007355 ORTHO05D009343 4.4e-12 75.1 93 48.4
A08p29560 Brassica napus HOM05D007355 ORTHO05D009343 9.8e-12 73.9 121 38.0
BraA08t34894Z Brassica rapa HOM05D007355 ORTHO05D009343 9.8e-12 73.9 121 38.0
Lsat_1_v5_gn_2_9841 Lactuca sativa HOM05D007355 ORTHO05D009343 9.8e-12 73.9 126 42.1
Lj1g0016145 Lotus japonicus HOM05D007355 ORTHO05D009343 9.8e-12 73.9 108 45.4
Cfa013942 Carpinus fangiana HOM05D007355 ORTHO05D009343 2.2e-11 72.8 98 49.0
MBI05_g15356_MAGBIO Magnolia biondii HOM05D007355 ORTHO05D009343 2.2e-11 72.8 121 41.3
MD15G1013100 Malus domestica HOM05D007355 ORTHO05D009343 3.7e-11 72.0 95 48.4
BcaC07g39013 Brassica carinata HOM05D007355 ORTHO05D009343 1.1e-10 70.5 94 44.7
Ca_13424_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 1.1e-10 70.5 96 47.9
Ca_13425_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 1.1e-10 70.5 96 47.9
Gorai.009G270200 Gossypium raimondii HOM05D007355 ORTHO05D009343 1.1e-10 70.5 99 46.5
C08p19840 Brassica napus HOM05D007355 ORTHO05D009343 1.4e-10 70.1 94 44.7
BolC8t49623H Brassica oleracea HOM05D007355 ORTHO05D009343 1.4e-10 70.1 94 44.7
Gohir.A05G257150 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.9e-10 69.7 99 46.5
SalBow7G4291 Salvia bowleyana HOM05D007355 ORTHO05D009343 1.9e-10 69.7 84 48.8
CARHR020450 Cardamine hirsuta HOM05D007355 ORTHO05D009343 3.2e-10 68.9 116 39.7
Sed0024841 Sechium edule HOM05D007355 ORTHO05D009343 3.2e-10 68.9 120 41.7
Gohir.D05G258650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 4.1e-10 68.6 99 45.5
Ah.11g039070 Amaranthus hybridus HOM05D007355 ORTHO05D009343 9.2e-10 67.4 86 46.5
Prupe.1G366200 Prunus persica HOM05D007355 ORTHO05D009343 1.2e-09 67.0 91 48.4
Sp1g17750 Schrenkiella parvula HOM05D007355 ORTHO05D009343 2.0e-09 66.2 122 38.5
AL1G32690 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 2.7e-09 65.9 80 43.8
Eucgr.F01645 Eucalyptus grandis HOM05D007355 ORTHO05D009343 2.7e-09 65.9 78 53.8
Sc15g0005040 Simmondsia chinensis HOM05D007355 ORTHO05D009343 6.0e-09 64.7 96 43.8
BcaB03g14421 Brassica carinata HOM05D007355 ORTHO05D009343 7.8e-09 64.3 108 40.7
Atru.chr13.303 Acer truncatum HOM05D007355 ORTHO05D009343 1.7e-08 63.2 78 48.7
Carub.0001s1949 Capsella rubella HOM05D007355 ORTHO05D009343 2.3e-08 62.8 91 39.6
ClCG08G014360 Citrullus lanatus HOM05D007355 ORTHO05D009343 2.3e-08 62.8 124 39.5
Migut.C00824 Erythranthe guttata HOM05D007355 ORTHO05D009343 3.0e-08 62.4 89 43.8
Thhalv10009918m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 3.0e-08 62.4 78 46.2
Lalb_Chr22g0354351 Lupinus albus HOM05D007355 ORTHO05D009343 6.6e-08 61.2 98 39.8
Medtr1g025150 Medicago truncatula HOM05D007355 ORTHO05D009343 6.6e-08 61.2 87 49.4
Rhsim07G0246800 Rhododendron simsii HOM05D007355 ORTHO05D009343 8.6e-08 60.8 81 43.2
THA.LOC104814032 Tarenaya hassleriana HOM05D007355 ORTHO05D009343 1.1e-07 60.5 93 44.1
MELO3C011006.2 Cucumis melo HOM05D007355 ORTHO05D009343 4.3e-07 58.5 129 37.2
CsaV3_2G029470 Cucumis sativus L. HOM05D007355 ORTHO05D009343 7.3e-07 57.8 124 36.3
Thhalv10019842m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 9.5e-07 57.4 78 46.2
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 9.5e-07 57.4 84 45.2
BcaB03g12886 Brassica carinata HOM05D007355 ORTHO05D009343 1.2e-06 57.0 107 37.4
BcaB03g14350 Brassica carinata HOM05D007355 ORTHO05D009343 1.2e-06 57.0 78 46.2
BcaC08g45561 Brassica carinata HOM05D007355 ORTHO05D009343 2.1e-06 56.2 78 44.9
ATR0627G001 Amborella trichopoda HOM05D007355 ORTHO05D009343 2.8e-06 55.8 122 36.1
BcaB02g07039 Brassica carinata HOM05D007355 ORTHO05D009343 2.8e-06 55.8 78 46.2
BcaC08g47049 Brassica carinata HOM05D007355 ORTHO05D009343 2.8e-06 55.8 79 46.8
C06p49660 Brassica napus HOM05D007355 ORTHO05D009343 2.8e-06 55.8 79 48.1
BolC6t40005H Brassica oleracea HOM05D007355 ORTHO05D009343 2.8e-06 55.8 79 48.1
CAN.G311.23 Capsicum annuum HOM05D007355 ORTHO05D009343 3.6e-06 55.5 79 48.1
Aa31LG4G5940 Aethionema arabicum HOM05D007355 ORTHO05D009343 4.7e-06 55.1 78 46.2
A07p41240 Brassica napus HOM05D007355 ORTHO05D009343 4.7e-06 55.1 78 44.9
BraA07t31659Z Brassica rapa HOM05D007355 ORTHO05D009343 4.7e-06 55.1 78 44.9


User provided reference genes

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