Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 1.3e-299 1032.3 539 100.0
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 1.7e-161 573.5 547 60.5
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 2.0e-159 566.6 548 61.1
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 1.5e-154 550.4 598 57.4
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 4.4e-154 548.9 550 59.6
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 7.7e-151 538.1 557 57.8
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.2e-150 536.6 570 55.4
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 7.2e-149 531.6 554 57.9
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 4.7e-148 528.9 550 56.9
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 4.7e-148 528.9 564 55.3
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.4e-147 527.3 548 54.7
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 5.2e-147 525.4 556 54.9
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 5.2e-147 525.4 544 56.1
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 2.4e-144 516.5 509 59.7
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.6e-143 513.8 557 55.8
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 3.5e-143 512.7 554 54.7
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 4.5e-143 512.3 552 56.3
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 7.7e-143 511.5 546 54.8
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.0e-142 511.1 552 56.3
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.7e-142 510.4 546 54.8
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 5.0e-142 508.8 546 56.0
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.6e-140 503.8 546 54.2
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 4.7e-140 502.3 558 55.7
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 6.1e-140 501.9 554 56.1
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 8.0e-140 501.5 553 53.9
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 8.0e-140 501.5 554 53.8
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.4e-139 500.7 564 52.8
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 8.8e-139 498.0 543 54.1
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 4.8e-137 492.3 545 55.6
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 4.8e-137 492.3 580 51.6
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 1.1e-136 491.1 557 54.9
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.4e-136 490.7 541 52.5
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 9.1e-136 488.0 569 52.7
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 4.5e-135 485.7 562 54.3
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.3e-134 484.2 546 54.0
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.3e-134 484.2 542 53.0
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 8.5e-134 481.5 551 54.1
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.9e-133 480.3 554 55.1
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 2.5e-133 479.9 551 53.9
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 9.4e-133 478.0 541 54.0
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 2.1e-132 476.9 540 54.4
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 4.8e-129 465.7 546 53.5
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 8.3e-129 464.9 554 55.1
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.1e-128 464.5 547 53.0
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.1e-128 464.5 558 53.9
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.4e-128 463.4 553 54.4
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 2.4e-128 463.4 546 52.9
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 9.1e-128 461.5 564 53.0
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.2e-127 461.1 560 53.8
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.6e-127 460.7 550 52.9
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 3.5e-127 459.5 548 52.6
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 5.0e-126 455.7 560 53.9
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 1.9e-125 453.8 550 51.5
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 9.5e-125 451.4 549 51.2
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 4.7e-124 449.1 540 51.1
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 4.7e-124 449.1 551 52.3
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 4.7e-124 449.1 561 51.3
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 8.0e-124 448.4 553 52.3
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.4e-123 447.6 553 52.3
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 4.0e-123 446.0 552 53.3
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 5.2e-123 445.7 566 50.2
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 1.2e-122 444.5 617 47.2
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 5.7e-122 442.2 549 51.9
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 4.9e-121 439.1 559 53.1
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.1e-120 438.0 546 51.1
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.1e-120 438.0 548 48.7
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 4.1e-120 436.0 532 52.8
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 1.2e-119 434.5 568 49.6
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 2.0e-119 433.7 574 49.8
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 4.5e-119 432.6 558 50.2
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 5.9e-119 432.2 561 49.6
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 5.9e-119 432.2 568 50.0
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 7.8e-119 431.8 542 50.2
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 6.6e-118 428.7 542 49.8
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 4.3e-117 426.0 559 51.2
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.8e-115 420.6 566 50.9
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 4.0e-115 419.5 543 48.8
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 5.8e-114 415.6 556 48.2
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 2.2e-113 413.7 562 47.5
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.2e-113 413.7 552 50.0
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 6.4e-113 412.1 542 48.2
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 4.1e-112 409.5 554 51.1
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 2.0e-111 407.1 554 49.8
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 8.6e-110 401.7 545 48.6
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 8.6e-110 401.7 543 48.6
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.5e-109 400.2 549 48.6
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 7.3e-109 398.7 545 46.1
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.2e-108 397.9 555 46.3
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.6e-108 397.5 549 48.8
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 8.0e-108 395.2 541 47.3
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 8.0e-108 395.2 541 46.6
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.8e-107 394.0 547 47.7
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.8e-107 394.0 600 47.0
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 3.1e-107 393.3 573 44.9
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.0e-106 390.6 537 46.9
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 3.4e-106 389.8 547 47.7
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 4.4e-106 389.4 540 47.0
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 5.8e-106 389.0 538 46.5
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.5e-106 388.7 549 48.1
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 9.2e-104 381.7 423 54.1
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 1.5e-101 374.4 554 46.8
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 1.9e-101 374.0 541 46.8
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 4.7e-100 369.4 556 45.1
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 7.5e-98 362.1 546 45.1
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 4.9e-97 359.4 545 45.9
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 2.4e-96 357.1 546 46.0
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 9.2e-96 355.1 545 46.6
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 8.1e-92 342.0 552 45.5
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 8.1e-92 342.0 552 45.5
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.1e-88 331.6 723 36.9
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.8e-83 314.3 363 52.3
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.7e-81 307.8 586 37.4
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 2.0e-74 284.3 295 55.6
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 4.6e-71 273.1 538 41.8
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 4.8e-68 263.1 532 39.7
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 1.4e-67 261.5 404 46.0
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 9.0e-67 258.8 306 50.0
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 3.4e-66 256.9 312 48.4
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 4.9e-65 253.1 536 38.8
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 4.9e-65 253.1 536 38.8
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 2.1e-60 237.7 592 34.8
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.7e-60 236.9 399 45.1
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 5.1e-54 216.5 593 33.2
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 8.7e-54 215.7 530 35.3
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 5.3e-51 206.5 421 35.9
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 6.7e-46 189.5 255 52.2
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.8e-43 181.4 293 41.3
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.1e-43 180.6 189 54.5
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.8e-41 173.7 289 43.9
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.6e-39 168.3 201 52.7
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.7e-39 167.5 237 47.3
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.7e-39 166.8 167 57.5
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 2.9e-33 147.5 723 27.9
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 8.5e-33 146.0 551 31.0
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.4e-27 128.6 181 48.1
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.3e-20 105.5 103 55.3
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 4.8e-20 103.6 137 45.3
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 3.1e-19 100.9 445 25.8
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.5e-18 97.4 97 51.5
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 4.5e-18 97.1 128 48.4
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 5.9e-18 96.7 178 40.4
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.2e-15 89.0 123 43.9
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 5.7e-13 80.1 235 29.8
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 8.3e-12 76.3 129 49.6
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.4e-11 74.7 504 26.0
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.4e-11 74.7 169 38.5
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 4.1e-11 73.9 237 31.6
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 1.3e-09 68.9 472 23.9
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.8e-06 58.5 97 44.3


User provided reference genes

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