Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 9.1e-281 969.5 475 100.0
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.0e-199 700.3 482 74.3
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.1e-196 688.3 493 72.6
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.6e-192 676.4 479 73.1
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.9e-191 671.8 479 71.8
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 2.5e-190 669.1 482 70.1
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.3e-190 668.3 473 73.2
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 2.8e-189 665.6 477 70.6
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.7e-189 665.2 480 70.2
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.7e-189 665.2 487 69.0
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 4.8e-189 664.8 484 70.0
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 8.2e-189 664.1 487 69.4
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 5.3e-188 661.4 485 70.1
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 6.9e-188 661.0 478 70.9
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 5.9e-187 657.9 482 70.5
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 7.7e-187 657.5 479 71.2
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 7.7e-187 657.5 489 69.7
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 3.8e-186 655.2 481 68.4
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 8.5e-186 654.1 480 69.6
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.9e-185 652.9 480 70.8
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 3.2e-185 652.1 484 68.2
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 5.5e-185 651.4 486 69.5
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 1.2e-184 650.2 484 68.0
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.2e-184 650.2 459 72.8
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.2e-184 650.2 484 68.0
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.6e-184 649.8 487 69.0
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 2.1e-184 649.4 483 68.3
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 2.1e-184 649.4 475 69.3
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 3.6e-184 648.7 474 69.6
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 1.0e-183 647.1 482 68.9
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.4e-183 646.7 477 68.6
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 2.3e-183 646.0 482 67.0
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 3.0e-183 645.6 479 69.1
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 8.8e-183 644.0 479 68.1
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 8.8e-183 644.0 468 71.2
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 2.0e-182 642.9 486 68.7
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 2.0e-182 642.9 486 68.9
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 2.6e-182 642.5 486 68.1
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 2.6e-182 642.5 486 68.7
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 4.4e-182 641.7 479 69.5
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 5.7e-182 641.3 476 69.1
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 9.7e-182 640.6 481 66.5
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 9.7e-182 640.6 480 68.8
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.3e-181 640.2 479 68.5
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.7e-181 639.8 484 66.9
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 4.8e-181 638.3 484 67.1
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.2e-181 637.5 479 68.3
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 4.1e-180 635.2 458 70.5
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 6.9e-180 634.4 487 68.8
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 1.5e-179 633.3 487 67.8
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.0e-179 632.9 477 67.5
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 1.3e-178 630.2 476 68.7
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.9e-178 629.0 486 66.5
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.8e-178 628.6 479 67.4
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.1e-177 627.1 479 66.6
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 3.2e-177 625.5 475 67.6
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.2e-176 623.6 483 67.5
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.6e-176 623.2 479 66.0
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 2.7e-176 622.5 551 61.0
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 8.8e-175 617.5 475 66.3
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 2.2e-173 612.8 477 66.0
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 6.3e-173 611.3 449 69.3
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 4.1e-172 608.6 454 68.5
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 5.3e-172 608.2 484 65.7
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.0e-171 606.3 438 71.5
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 1.0e-170 604.0 476 64.1
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 3.8e-170 602.1 479 64.3
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.0e-167 594.0 478 64.4
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 1.4e-167 593.6 438 68.9
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.8e-167 593.2 476 64.7
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.2e-166 590.5 483 64.4
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 4.4e-166 588.6 447 65.8
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.3e-165 587.0 479 64.7
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 4.8e-165 585.1 489 62.8
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 2.4e-164 582.8 479 64.1
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 4.1e-164 582.0 479 63.3
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 7.0e-164 581.3 477 65.2
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 9.1e-164 580.9 479 64.1
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 2.7e-163 579.3 479 63.7
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.0e-162 577.4 478 63.2
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.0e-162 577.4 481 63.8
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 6.5e-162 574.7 479 63.3
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 2.5e-161 572.8 487 61.8
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 3.6e-160 568.9 475 62.9
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 6.1e-160 568.2 502 59.6
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.0e-159 565.8 475 62.7
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 4.0e-159 565.5 476 63.7
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 5.2e-159 565.1 475 61.9
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.2e-158 563.9 476 63.0
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 5.7e-158 561.6 479 62.2
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.3e-157 560.5 530 58.7
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.7e-157 560.1 479 62.0
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.7e-157 560.1 479 62.0
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 2.2e-157 559.7 475 62.5
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 2.2e-157 559.7 475 62.3
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 4.8e-157 558.5 475 62.3
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 6.3e-157 558.1 475 61.9
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 8.3e-157 557.8 434 65.2
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.7e-155 552.7 480 61.0
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.3e-154 550.4 471 61.1
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.5e-154 548.1 475 61.1
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.2e-153 545.4 438 66.2
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 7.2e-153 544.7 421 66.0
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.3e-151 539.7 520 55.0
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 2.0e-150 536.6 481 58.0
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 8.3e-149 531.2 425 63.8
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 1.4e-148 530.4 447 62.2
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 4.1e-148 528.9 480 61.2
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.4e-142 509.2 415 64.3
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 5.9e-139 498.4 375 66.4
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.1e-135 486.1 488 58.2
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 8.3e-133 478.0 521 50.7
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.5e-131 472.6 359 66.9
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 7.8e-131 471.5 444 58.6
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 1.2e-126 457.6 496 51.2
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 4.9e-125 452.2 473 52.4
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.1e-124 449.1 367 63.2
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 2.5e-113 413.3 277 73.6
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 6.9e-111 405.2 465 47.1
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 4.6e-107 392.5 547 42.2
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 3.1e-103 379.8 293 65.2
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.7e-98 362.1 440 49.1
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 2.7e-83 313.5 278 60.8
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 8.2e-80 302.0 333 55.3
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 5.3e-79 299.3 235 66.0
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 6.5e-77 292.4 476 39.1
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.6e-67 261.2 424 41.7
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 4.7e-67 259.6 390 39.2
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.2e-64 250.8 281 49.1
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 9.1e-63 245.4 489 33.5
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.7e-61 241.1 257 52.5
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.4e-60 235.3 282 52.5
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.7e-56 223.4 199 57.8
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 2.0e-54 217.6 510 32.2
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.5e-52 211.5 110 90.0
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.9e-52 211.1 187 59.4
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 5.5e-52 209.5 454 34.6
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.6e-51 208.0 110 88.2
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.1e-51 206.1 110 87.3
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.2e-49 201.8 248 48.8
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.7e-43 179.9 298 37.9
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.0e-42 177.2 110 78.2
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.6e-38 164.9 105 76.2
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 1.9e-36 157.9 106 75.5
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.4e-33 147.1 178 47.2
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.5e-30 136.7 174 46.0
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 4.5e-30 136.7 167 46.1
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.1e-28 132.1 128 52.3
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 9.5e-28 129.0 125 54.4
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 2.0e-22 111.3 85 64.7
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.7e-22 110.9 64 87.5
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 6.0e-22 109.8 192 39.1
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 1.1e-20 105.5 66 74.2
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 1.7e-16 91.7 46 93.5
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.6e-14 85.1 57 71.9
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 1.0e-13 82.4 55 70.9
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 5.1e-13 80.1 79 57.0
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 4.7e-11 73.6 46 78.3
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 2.6e-09 67.8 52 67.3
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.6e-06 58.5 29 96.6
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.5e-06 57.4 29 93.1


User provided reference genes

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