Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 0.0e+00 1751.5 876 100.0
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 0.0e+00 1125.2 815 66.9
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1088.6 817 65.9
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1084.3 817 65.7
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 6.5e-309 1063.9 815 65.0
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 8.8e-306 1053.5 852 62.7
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 2.0e-305 1052.4 808 63.4
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 3.4e-305 1051.6 811 63.6
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 4.1e-303 1044.6 816 62.7
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 9.2e-303 1043.5 816 63.7
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 2.9e-301 1038.5 812 63.2
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 7.3e-300 1033.9 812 62.6
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 2.1e-299 1032.3 812 62.4
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 5.7e-297 1024.2 823 62.1
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 1.6e-294 1016.1 821 61.6
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 1.6e-294 1016.1 811 61.5
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 5.9e-294 1014.2 812 61.6
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 7.8e-294 1013.8 813 61.4
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 1.0e-293 1013.4 817 62.3
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.1e-292 1010.0 813 62.5
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 1.5e-292 1009.6 835 62.9
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 6.2e-291 1004.2 875 58.3
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.5e-289 999.6 814 61.2
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 9.8e-289 996.9 808 61.1
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 1.4e-287 993.0 808 61.0
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 2.4e-287 992.3 817 61.8
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.2e-286 989.9 818 61.6
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.3e-285 986.5 813 60.4
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 1.3e-285 986.5 813 60.3
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 3.9e-285 984.9 811 59.8
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.9e-285 984.9 807 60.6
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 5.0e-285 984.6 808 60.8
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.5e-284 983.0 811 60.5
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 3.3e-284 981.9 813 59.9
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 4.7e-283 978.0 812 60.6
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 1.4e-282 976.5 813 59.4
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 1.8e-282 976.1 811 60.2
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 5.2e-282 974.5 808 60.3
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 8.9e-282 973.8 819 60.1
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 3.4e-281 971.8 818 58.6
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 4.4e-281 971.5 807 59.4
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 9.8e-281 970.3 815 60.0
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 8.3e-280 967.2 804 60.0
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.2e-279 965.3 822 60.2
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 2.1e-278 962.6 816 59.7
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.1e-278 962.6 809 60.0
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 2.1e-278 962.6 810 58.9
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 4.6e-278 961.4 815 59.5
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.0e-277 960.3 809 58.6
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 8.6e-277 957.2 818 58.6
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 6.2e-275 951.0 786 60.8
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 2.3e-274 949.1 815 59.0
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.3e-272 943.3 809 57.6
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.9e-272 942.2 871 55.9
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 6.4e-272 941.0 811 58.2
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 3.2e-271 938.7 828 59.1
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 7.1e-271 937.6 808 59.2
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 4.6e-270 934.9 815 58.8
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 1.0e-269 933.7 813 59.0
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 1.4e-266 923.3 815 58.4
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 6.9e-266 921.0 808 57.4
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 2.9e-264 915.6 804 56.6
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 2.1e-262 909.4 814 56.3
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.0e-261 907.1 820 56.5
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 2.3e-261 906.0 806 57.7
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 2.3e-261 906.0 805 56.3
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 3.9e-261 905.2 810 58.0
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.5e-260 903.3 823 55.8
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 5.6e-260 901.4 807 56.5
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 3.6e-259 898.7 822 55.5
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.1e-258 895.6 821 55.2
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 4.0e-258 895.2 820 55.4
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 1.2e-257 893.6 835 55.9
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 9.9e-257 890.6 811 57.6
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.3e-256 890.2 806 54.3
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 2.2e-256 889.4 812 57.6
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 8.4e-256 887.5 827 55.1
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 3.2e-255 885.6 804 55.8
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 1.8e-253 879.8 819 54.8
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 3.9e-253 878.6 819 54.8
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 6.7e-253 877.9 826 54.2
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 6.7e-253 877.9 819 54.7
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 4.3e-252 875.2 820 54.1
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 4.8e-251 871.7 811 56.1
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 8.1e-251 870.9 856 52.6
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.4e-249 865.5 828 55.1
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 1.1e-247 860.5 808 53.2
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.1e-246 856.3 808 54.5
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 2.7e-246 855.9 814 54.9
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 2.6e-241 839.3 808 51.9
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 3.1e-234 815.8 811 52.0
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 6.9e-234 814.7 808 51.5
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 3.8e-232 808.9 819 51.8
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 6.5e-232 808.1 810 52.0
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 3.2e-231 805.8 623 62.4
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 3.0e-229 799.3 748 54.4
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 6.9e-226 788.1 810 50.6
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 2.6e-225 786.2 886 49.5
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.1e-223 780.8 582 66.3
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 9.1e-218 761.1 537 68.0
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 1.2e-185 654.4 461 69.8
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 5.0e-184 649.0 822 44.4
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.9e-183 647.1 823 44.3
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 7.5e-180 635.2 821 42.6
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 3.3e-175 619.8 851 43.7
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 1.1e-165 588.2 819 43.0
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 2.7e-153 547.0 844 38.2
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 6.9e-149 532.3 816 40.8
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 1.5e-143 514.6 685 42.8
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.9e-139 500.4 472 53.8
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 2.4e-138 497.3 580 48.3
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 3.3e-135 486.9 851 36.2
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 4.5e-132 476.5 830 35.9
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 2.5e-127 460.7 820 37.9
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 9.6e-127 458.8 815 37.5
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 1.9e-122 444.5 847 33.9
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 8.7e-120 435.6 338 63.6
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 5.5e-98 363.2 410 47.6
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 6.3e-94 349.7 760 31.6
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 5.4e-77 293.5 405 43.2
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 2.0e-63 248.4 729 28.1
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 2.4e-61 241.5 196 60.7
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 2.1e-57 228.4 156 67.9
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 1.4e-56 225.7 276 45.7
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 1.5e-55 222.2 275 45.5
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 2.2e-54 218.4 275 45.1
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 7.1e-45 186.8 838 22.3
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.6e-44 185.7 201 48.8
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.6e-44 185.7 164 60.4
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.6e-33 149.1 470 28.3
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 2.2e-30 138.7 127 55.1
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 4.6e-28 131.0 130 49.2
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 5.1e-27 127.5 138 48.6
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 2.1e-20 105.5 94 57.4
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 2.6e-15 88.6 61 68.9
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 3.8e-14 84.7 63 65.1
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.2e-12 79.7 70 54.3
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 1.5e-10 72.8 102 41.2
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 4.3e-10 71.2 97 37.1
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 7.4e-10 70.5 93 43.0
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 9.6e-10 70.1 102 42.2
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.6e-09 69.3 49 63.3
DCAR_011165 Daucus carota HOM05D000349 ORTHO05D000039 5.3e-08 64.3 40 77.5
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 2.6e-07 62.0 48 54.2
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 4.9e-06 57.8 83 43.4
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 6.5e-06 57.4 47 63.8
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 6.5e-06 57.4 47 63.8
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 6.5e-06 57.4 47 63.8
Lsat_1_v5_gn_4_117360 Lactuca sativa HOM05D004893 ORTHO05D006320 6.5e-06 57.4 83 43.4


User provided reference genes

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