Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013711 Daucus carota HOM05D003830 ORTHO05D004446 0.0e+00 1416.4 750 100.0
DCAR_024085 Daucus carota HOM05D003830 ORTHO05D004446 0.0e+00 1365.1 765 95.2
Dinv10992 Davidia involucrata HOM05D003830 ORTHO05D004446 1.5e-152 544.3 781 48.0
Dinv14800 Davidia involucrata HOM05D003830 ORTHO05D004446 6.7e-145 518.8 739 48.2
CSS0000134 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 1.1e-144 518.1 782 46.7
Actinidia25761 Actinidia chinensis HOM05D003830 ORTHO05D004446 8.2e-135 485.3 778 45.6
DCAR_007014 Daucus carota HOM05D003830 ORTHO05D004446 4.7e-130 469.5 778 42.3
GSVIVG01010345001 Vitis vinifera HOM05D003830 ORTHO05D004446 3.0e-129 466.8 796 43.1
Atru.chr11.2246 Acer truncatum HOM05D003830 ORTHO05D004446 3.4e-112 410.2 794 42.1
Atru.chr11.2261 Acer truncatum HOM05D003830 ORTHO05D004446 4.4e-112 409.8 794 41.9
CiPaw.05G115100 Carya illinoinensis HOM05D003830 ORTHO05D004446 7.5e-112 409.1 792 40.5
QL03p054734 Quercus lobata HOM05D003830 ORTHO05D004446 9.8e-112 408.7 793 41.5
Cc11_g16600 Coffea canephora HOM05D003830 ORTHO05D004446 2.8e-111 407.1 782 41.2
Rhsim12G0030500 Rhododendron simsii HOM05D003830 ORTHO05D004446 1.1e-110 405.2 799 40.6
Lj6C822T9 Lonicera japonica HOM05D003830 ORTHO05D004446 5.4e-110 402.9 638 45.5
Cfa009315 Carpinus fangiana HOM05D003830 ORTHO05D008363 1.1e-107 395.2 812 40.5
Manes.12G014700 Manihot esculenta HOM05D003830 ORTHO05D004446 5.6e-107 392.9 807 39.8
Hma1.2p1_0167F.1_g073780 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 1.6e-106 391.3 773 41.9
Peaxi162Scf00128g00924 Petunia axillaris HOM05D003830 ORTHO05D004446 2.1e-106 391.0 788 40.9
Ciclev10030548m.g Citrus clementina HOM05D003830 ORTHO05D004446 8.0e-106 389.0 796 39.1
Cpa.g.c26951.1 Carica papaya HOM05D003830 ORTHO05D004446 4.0e-105 386.7 785 40.4
CAN.G692.1 Capsicum annuum HOM05D003830 ORTHO05D004446 2.0e-104 384.4 787 39.8
Nitab4.5_0000240g0070 Nicotiana tabacum HOM05D003830 ORTHO05D004446 2.9e-103 380.6 783 40.5
Oeu041685.1 Olea europaea HOM05D003830 ORTHO05D004446 1.9e-102 377.9 785 39.6
RcHm_v2.0_Chr4g0431121 Rosa chinensis HOM05D003830 ORTHO05D004446 2.4e-102 377.5 813 38.9
Prupe.1G233200 Prunus persica HOM05D003830 ORTHO05D004446 3.2e-102 377.1 795 39.1
vmacro01085 Vaccinium macrocarpon HOM05D003830 ORTHO05D004446 9.2e-102 375.6 836 38.0
Potri.008G178600 Populus trichocarpa HOM05D003830 ORTHO05D004446 2.0e-101 374.4 791 39.3
Nitab4.5_0011772g0020 Nicotiana tabacum HOM05D003830 ORTHO05D004446 3.5e-101 373.6 787 40.4
Thecc.02G274300 Theobroma cacao HOM05D003830 ORTHO05D004446 6.0e-101 372.9 791 40.2
PGSC0003DMG400017461 Solanum tuberosum HOM05D003830 ORTHO05D004446 1.3e-100 371.7 786 39.6
Sopen05g009770 Solanum pennellii HOM05D003830 ORTHO05D004446 1.2e-98 365.2 786 38.9
Oeu038669.1 Olea europaea HOM05D003830 ORTHO05D004446 4.7e-98 363.2 785 39.5
Potri.010G056200 Populus trichocarpa HOM05D003830 ORTHO05D004446 4.0e-97 360.1 831 37.8
TAR622G0818 Trochodendron aralioides HOM05D003830 ORTHO05D004446 4.4e-96 356.7 803 38.2
Manes.13G015800 Manihot esculenta HOM05D003830 ORTHO05D004446 5.8e-96 356.3 786 37.9
Solyc05g014640.3 Solanum lycopersicum HOM05D003830 ORTHO05D004446 9.8e-96 355.5 789 38.8
CANSAT01G2001 Cannabis sativa HOM05D003830 ORTHO05D004446 1.7e-95 354.8 793 38.1
TWI75G0226 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 2.2e-95 354.4 787 38.9
Sabra10G0048900 Salix brachista HOM05D003830 ORTHO05D004446 2.9e-95 354.0 833 37.5
MSTRG.524 Avicennia marina HOM05D003830 ORTHO05D004446 1.1e-94 352.1 776 39.0
Sabra08G0136300 Salix brachista HOM05D003830 ORTHO05D004446 2.4e-94 350.9 809 38.2
FvH4_4g24320 Fragaria vesca HOM05D003830 ORTHO05D004446 4.1e-94 350.1 818 37.0
Hma1.2p1_1340F.1_g276750 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 9.2e-94 349.0 773 39.6
Duzib251G0504 Durio zibethinus HOM05D003830 ORTHO05D004446 1.2e-93 348.6 786 39.2
FAN12G3820 Fragaria x ananassa HOM05D003830 ORTHO05D004446 1.2e-93 348.6 818 36.7
FAN17G1537 Fragaria x ananassa HOM05D003830 ORTHO05D004446 4.6e-93 346.7 818 37.5
MD16G1111800 Malus domestica HOM05D003830 ORTHO05D004446 1.3e-92 345.1 829 38.1
Duzib248G1684 Durio zibethinus HOM05D003830 ORTHO05D004446 4.3e-91 340.1 790 38.6
TAR374G0580 Trochodendron aralioides HOM05D003830 ORTHO05D004446 5.6e-91 339.7 799 37.7
Duzib268G1283 Durio zibethinus HOM05D003830 ORTHO05D004446 2.8e-90 337.4 789 38.3
COL.COLO4_23621 Corchorus olitorius HOM05D003830 ORTHO05D004446 3.6e-90 337.0 772 38.1
MD13G1112200 Malus domestica HOM05D003830 ORTHO05D004446 3.6e-90 337.0 848 36.4
FAN22G2024 Fragaria x ananassa HOM05D003830 ORTHO05D004446 4.7e-90 336.7 812 36.2
Nn4g22404 Nelumbo nucifera HOM05D003830 ORTHO05D004446 4.7e-90 336.7 824 37.3
SalBow2G2689 Salvia bowleyana HOM05D003830 ORTHO05D004446 3.4e-88 330.5 785 38.6
TAR629G0808 Trochodendron aralioides HOM05D003830 ORTHO05D004446 6.4e-87 326.2 791 37.0
Actinidia33257 Actinidia chinensis HOM05D003830 ORTHO05D004446 4.6e-85 320.1 645 39.8
Oeu056685.2 Olea europaea HOM05D003830 ORTHO05D004446 4.6e-85 320.1 814 37.0
Nn3g16538 Nelumbo nucifera HOM05D003830 ORTHO05D004446 5.6e-83 313.2 834 36.2
TWI36G0084 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 9.5e-83 312.4 781 36.9
Gohir.D02G152400 Gossypium hirsutum HOM05D003830 ORTHO05D004446 4.7e-82 310.1 786 36.5
Gorai.005G171400 Gossypium raimondii HOM05D003830 ORTHO05D004446 4.7e-82 310.1 786 36.5
CSS0032396 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 2.4e-81 307.8 587 41.4
Gohir.A03G128600 Gossypium hirsutum HOM05D003830 ORTHO05D004446 2.4e-81 307.8 786 36.5
Phvul.002G176100 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 2.6e-80 304.3 803 36.0
Rhsim12G0031400 Rhododendron simsii HOM05D003830 ORTHO05D004446 2.6e-80 304.3 627 40.2
TWI18G0501 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 2.1e-77 294.7 780 36.3
MSTRG.7981 Avicennia marina HOM05D003830 ORTHO05D004446 4.6e-77 293.5 781 35.7
Glyma.11G248200 Glycine max HOM05D003830 ORTHO05D004446 3.0e-76 290.8 792 36.1
arahy.Tifrunner.gnm1.ann1.ZS76EK Arachis hypogaea HOM05D003830 ORTHO05D004446 3.9e-76 290.4 790 34.6
Aqoxy3G01454 Aquilegia oxysepala HOM05D003830 ORTHO05D004446 2.5e-75 287.7 787 34.2
ClCG08G017300 Citrullus lanatus HOM05D003830 ORTHO05D004446 3.3e-75 287.3 800 35.8
arahy.Tifrunner.gnm1.ann1.D6D033 Arachis hypogaea HOM05D003830 ORTHO05D004446 5.6e-75 286.6 790 35.3
Glyma.18G009000 Glycine max HOM05D003830 ORTHO05D004446 5.6e-75 286.6 794 35.5
VMungo0251G0774 Vigna mungo HOM05D003830 ORTHO05D004446 7.3e-75 286.2 791 35.1
EL10Ac6g13438 Beta vulgaris HOM05D003830 ORTHO05D004446 1.2e-74 285.4 789 36.4
Phvul.001G259600 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 2.1e-74 284.6 797 35.6
Sed0027794 Sechium edule HOM05D003830 ORTHO05D004446 4.0e-73 280.4 790 36.2
AUR62005571 Chenopodium quinoa HOM05D003830 ORTHO05D004446 9.0e-73 279.3 796 35.7
Actinidia30673 Actinidia chinensis HOM05D003830 ORTHO05D004446 5.8e-72 276.6 555 41.4
CsaV3_2G025330 Cucumis sativus L. HOM05D003830 ORTHO05D004446 6.4e-71 273.1 790 34.8
Glyma.08G102200 Glycine max HOM05D003830 ORTHO05D004446 6.4e-71 273.1 799 33.5
AUR62024159 Chenopodium quinoa HOM05D003830 ORTHO05D004446 1.4e-70 271.9 793 35.3
Lj4g0001101 Lotus japonicus HOM05D003830 ORTHO05D004446 7.1e-70 269.6 794 34.5
Lalb_Chr08g0230701 Lupinus albus HOM05D003830 ORTHO05D004446 9.3e-70 269.2 801 35.2
Ca_16482_v3 Cicer arietinum L. HOM05D003830 ORTHO05D004446 1.2e-69 268.9 792 34.3
PGR102G1232 Punica granatum HOM05D003830 ORTHO05D004446 1.6e-69 268.5 804 35.3
MELO3C010729.2 Cucumis melo HOM05D003830 ORTHO05D004446 6.0e-69 266.5 799 34.2
Migut.K00697 Erythranthe guttata HOM05D003830 ORTHO05D004446 6.0e-69 266.5 783 35.6
Eucgr.H04665 Eucalyptus grandis HOM05D003830 ORTHO05D004446 2.3e-68 264.6 796 35.4
VMungo1383G3029 Vigna mungo HOM05D003830 ORTHO05D004446 7.3e-67 259.6 802 35.2
MBI08_g41743_MAGBIO Magnolia biondii HOM05D003830 ORTHO05D004446 8.1e-66 256.1 785 34.1
Migut.E00239 Erythranthe guttata HOM05D003830 ORTHO05D004446 3.1e-65 254.2 771 33.2
TPR.G22439 Trifolium pratense HOM05D003830 ORTHO05D004446 2.0e-64 251.5 819 32.6
Glyma.05G145400 Glycine max HOM05D003830 ORTHO05D004446 1.3e-63 248.8 795 32.7
arahy.Tifrunner.gnm1.ann1.MTFP9U Arachis hypogaea HOM05D003830 ORTHO05D004446 2.7e-61 241.1 789 32.8
arahy.Tifrunner.gnm1.ann1.JB8DT0 Arachis hypogaea HOM05D003830 ORTHO05D004446 8.7e-60 236.1 800 32.0
Lalb_Chr23g0277961 Lupinus albus HOM05D003830 ORTHO05D004446 1.9e-59 235.0 801 33.6
ECA234G2423 Erigeron canadensis HOM05D003830 ORTHO05D004446 2.5e-59 234.6 769 31.6
SalBow8G5205 Salvia bowleyana HOM05D003830 ORTHO05D004446 3.7e-58 230.7 778 31.0
ECA233G0646 Erigeron canadensis HOM05D003830 ORTHO05D004446 2.0e-56 224.9 712 33.0
Lalb_Chr11g0075701 Lupinus albus HOM05D003830 ORTHO05D004446 2.9e-55 221.1 801 33.6
Sc11g0000660 Simmondsia chinensis HOM05D003830 ORTHO05D004446 8.7e-52 209.5 792 31.7
HanXRQChr08g0207491 Helianthus annuus HOM05D003830 ORTHO05D004446 3.3e-51 207.6 774 31.7
PSO782G2541 Papaver somniferum HOM05D003830 ORTHO05D004446 3.8e-47 194.1 799 30.4
unitig_747.g21131 Utricularia gibba HOM05D003830 ORTHO05D004446 1.9e-46 191.8 777 31.3
CARHR027310 Cardamine hirsuta HOM05D003830 ORTHO05D004446 5.5e-46 190.3 807 31.2
PSO063G3359 Papaver somniferum HOM05D003830 ORTHO05D004446 4.6e-45 187.2 799 30.2
Thhalv10006616m.g Eutrema salsugineum HOM05D003830 ORTHO05D004446 7.9e-45 186.4 805 29.7
Hund06065 Selenicereus undatus HOM05D003830 ORTHO05D004446 1.5e-43 182.2 841 30.0
HanXRQChr17g0569161 Helianthus annuus HOM05D003830 ORTHO05D004446 2.5e-43 181.4 774 30.0
BolC5t31369H Brassica oleracea HOM05D003830 ORTHO05D004446 4.8e-42 177.2 792 29.5
A09p38310 Brassica napus HOM05D003830 ORTHO05D004446 8.2e-42 176.4 794 29.8
C05p26490 Brassica napus HOM05D003830 ORTHO05D004446 8.2e-42 176.4 787 29.5
BraA09t39341Z Brassica rapa HOM05D003830 ORTHO05D004446 1.4e-41 175.6 797 29.5
Carub.0001s2631 Capsella rubella HOM05D003830 ORTHO05D004446 1.2e-40 172.6 791 29.1
Aa31sc109G20 Aethionema arabicum HOM05D003830 ORTHO05D004446 2.0e-40 171.8 808 29.3
AT1G27850 Arabidopsis thaliana HOM05D003830 ORTHO05D004446 4.2e-38 164.1 814 28.9
AL1G41340 Arabidopsis lyrata HOM05D003830 ORTHO05D004446 5.5e-38 163.7 796 28.5
BcaC05g26779 Brassica carinata HOM05D003830 ORTHO05D004446 2.1e-37 161.8 805 27.7
Sp1g24060 Schrenkiella parvula HOM05D003830 ORTHO05D004446 1.0e-36 159.5 811 28.9
Lsat_1_v5_gn_4_2860 Lactuca sativa HOM05D003830 ORTHO05D004446 8.8e-36 156.4 789 29.9
CDE07G0717 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 3.3e-35 154.5 794 28.1
A08p26030 Brassica napus HOM05D003830 ORTHO05D004446 7.4e-35 153.3 815 29.0
Psat5g094600 Pisum sativum HOM05D003830 ORTHO05D004446 2.4e-33 148.3 775 29.2
CDE04G0036 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 6.9e-33 146.7 856 28.2
SGA_v2.0_scaffold391G50642 Striga asiatica HOM05D003830 ORTHO05D004446 9.1e-33 146.4 767 29.3
BraA08t34553Z Brassica rapa HOM05D003830 ORTHO05D004446 3.4e-32 144.4 806 27.7
C03p74620 Brassica napus HOM05D003830 ORTHO05D004446 4.5e-32 144.1 807 28.4
BolC3t19710H Brassica oleracea HOM05D003830 ORTHO05D004446 1.3e-31 142.5 802 28.2
Os12g0239200 Oryza sativa ssp. japonica HOM05D003830 ORTHO05D004446 1.1e-30 139.4 820 26.6
SGA_v2.0_scaffold87G27127 Striga asiatica HOM05D003830 ORTHO05D004446 5.5e-30 137.1 564 31.4
BcaNung07311 Brassica carinata HOM05D003830 ORTHO05D004446 1.8e-28 132.1 651 27.8
THA.LOC104825519 Tarenaya hassleriana HOM05D003830 ORTHO05D004446 6.3e-26 123.6 785 27.4
Lj6C822T10 Lonicera japonica HOM05D003830 ORTHO05D004446 7.7e-24 116.7 133 54.1
FAN07G1399 Fragaria x ananassa HOM05D003830 ORTHO05D004446 1.3e-23 115.9 196 41.8
HPP92_004598 Vanilla planifolia HOM05D003830 ORTHO05D004446 4.2e-22 110.9 798 25.1
Actinidia30674 Actinidia chinensis HOM05D003830 ORTHO05D004446 1.8e-20 105.5 202 40.1
Lsat_1_v5_gn_8_150260 Lactuca sativa HOM05D003830 ORTHO05D004446 1.1e-17 96.3 779 25.0
unitig_699.g19949 Utricularia gibba HOM05D003830 ORTHO05D004446 2.4e-17 95.1 613 25.6
SEGI_06277 Sequoiadendron giganteum HOM05D003830 ORTHO05D004446 2.9e-15 88.2 861 25.8
Zm00001eb409890 Zea mays HOM05D003830 ORTHO05D004446 9.4e-14 83.2 826 24.7
BcaC05g26601 Brassica carinata HOM05D003830 ORTHO05D004446 2.7e-13 81.6 367 30.2
FAN07G1859 Fragaria x ananassa HOM05D003830 ORTHO05D004446 2.3e-12 78.6 110 50.0
Os12g0239000 Oryza sativa ssp. japonica HOM05D003830 ORTHO05D004446 2.6e-11 75.1 841 23.7
Zm00001eb133580 Zea mays HOM05D003830 ORTHO05D004446 4.4e-11 74.3 786 26.2
SHI17938 Sapria himalayana HOM05D003830 ORTHO05D004446 2.2e-10 72.0 262 29.4
Zm00001eb133500 Zea mays HOM05D003830 ORTHO05D004446 3.1e-09 68.2 816 24.1
Rhsim12G0030600 Rhododendron simsii HOM05D003830 ORTHO05D004446 2.7e-08 65.1 203 36.9
ATR0609G075 Amborella trichopoda HOM05D003830 ORTHO05D004446 5.0e-07 60.8 585 25.0


User provided reference genes

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