Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 8.0e-310 1066.2 532 100.0
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 5.3e-253 877.5 852 59.6
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 1.1e-210 736.9 600 63.5
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.0e-209 730.7 619 62.2
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.0e-208 728.8 619 62.0
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 1.1e-202 710.3 614 59.4
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.4e-197 693.3 596 60.4
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 2.3e-195 686.0 618 58.1
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 5.0e-195 684.9 618 58.1
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 6.6e-195 684.5 615 60.3
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.2e-193 680.2 618 57.6
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.2e-193 680.2 592 61.0
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 4.7e-193 678.3 618 57.6
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 6.3e-190 667.9 624 57.5
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 4.1e-189 665.2 617 56.9
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 2.0e-188 662.9 619 57.5
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 2.3e-187 659.4 621 56.4
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 2.1e-185 652.9 626 55.6
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 6.8e-184 647.9 596 58.6
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.3e-182 643.7 619 55.9
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 1.7e-182 643.3 530 62.8
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 8.3e-182 641.0 622 54.7
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 4.6e-180 635.2 622 53.7
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 1.0e-179 634.0 624 54.8
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 3.9e-179 632.1 621 54.8
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 5.0e-179 631.7 615 54.5
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 5.0e-179 631.7 654 52.1
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.5e-178 630.2 605 55.7
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.6e-177 626.7 619 53.8
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 8.1e-177 624.4 622 54.2
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.1e-176 624.0 595 55.3
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.4e-176 623.6 621 54.4
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 4.0e-176 622.1 572 57.0
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.5e-175 620.2 619 54.6
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 1.7e-174 616.7 628 53.3
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 1.7e-174 616.7 619 54.1
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.7e-174 616.7 605 55.5
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 1.9e-173 613.2 624 54.0
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 2.4e-173 612.8 628 53.2
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 5.4e-173 611.7 619 54.1
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 2.7e-172 609.4 624 52.9
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 2.3e-171 606.3 622 52.6
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 2.3e-171 606.3 647 52.9
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 1.1e-170 604.0 599 54.4
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 5.6e-170 601.7 598 54.7
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 2.1e-169 599.7 623 53.0
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 1.4e-168 597.0 527 57.5
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 6.8e-168 594.7 633 52.8
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 2.2e-166 589.7 691 48.2
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 3.7e-166 589.0 623 53.0
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 6.4e-166 588.2 604 53.3
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 1.1e-165 587.4 623 51.2
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 7.1e-165 584.7 628 51.9
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 6.0e-164 581.6 627 51.2
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.3e-163 580.5 638 49.8
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 3.9e-163 578.9 616 51.1
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 1.5e-162 577.0 624 50.5
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 3.3e-162 575.9 624 50.3
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 5.6e-162 575.1 621 50.2
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 6.2e-161 571.6 621 49.9
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.8e-160 570.1 604 51.3
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 5.2e-160 568.5 624 50.2
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 6.8e-160 568.2 626 50.5
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 1.2e-159 567.4 619 49.8
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.5e-159 567.0 619 50.7
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 1.5e-159 567.0 622 49.5
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 2.0e-159 566.6 623 50.7
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.6e-159 566.2 620 51.1
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 7.6e-159 564.7 623 50.6
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 3.8e-158 562.4 624 49.8
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 8.4e-158 561.2 623 50.1
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 1.4e-157 560.5 619 49.9
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 9.3e-157 557.8 625 50.2
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 6.0e-156 555.1 619 48.8
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 6.0e-156 555.1 617 48.8
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 1.0e-155 554.3 623 49.0
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 1.3e-155 553.9 621 49.9
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 1.7e-155 553.5 623 49.6
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 6.6e-155 551.6 619 48.8
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 1.9e-154 550.1 619 48.5
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 3.3e-154 549.3 619 48.5
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 4.3e-154 548.9 625 48.3
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 3.6e-153 545.8 623 48.5
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 6.2e-153 545.0 624 47.9
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 8.1e-153 544.7 619 48.1
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 8.1e-153 544.7 619 48.1
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 8.1e-153 544.7 629 48.2
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 1.4e-149 533.9 627 48.5
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 4.2e-149 532.3 627 49.1
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 3.5e-148 529.3 618 48.2
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 6.0e-148 528.5 567 50.6
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 1.0e-147 527.7 624 47.8
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 8.1e-145 518.1 623 48.3
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 7.6e-143 511.5 681 44.6
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 4.3e-138 495.7 632 44.5
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 5.6e-138 495.4 661 44.8
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.9e-133 480.3 622 45.2
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 1.8e-128 463.8 609 45.3
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 8.7e-123 444.9 624 42.5
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 3.3e-122 443.0 556 45.9
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 9.0e-120 434.9 487 49.3
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.3e-113 414.5 645 39.4
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.3e-113 414.5 645 39.4
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.4e-112 410.2 642 39.3
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 5.1e-107 392.5 625 38.7
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.4e-104 383.6 359 58.5
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 5.2e-99 365.9 364 56.0
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.9e-94 350.1 625 36.0
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 3.2e-93 346.7 606 36.6
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 2.0e-90 337.4 627 34.6
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 2.8e-89 333.6 650 34.5
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.9e-79 299.3 384 43.2
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 4.3e-77 293.1 405 41.2
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.2e-76 291.6 575 33.2
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 1.7e-65 254.6 489 34.2
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.2e-52 211.8 130 79.2
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 1.5e-50 204.9 215 50.7
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 4.9e-41 173.3 241 41.1
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 1.9e-40 171.4 237 44.7
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 4.2e-40 170.2 179 48.6
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 2.8e-36 157.5 127 62.2
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 2.6e-34 151.0 622 25.1
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 3.2e-32 144.1 344 31.1
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 2.3e-30 137.9 128 54.7
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.1e-29 135.6 126 54.0
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.4e-26 124.0 150 44.7
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.7e-25 121.7 234 32.1
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.7e-25 121.7 191 40.8
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.2e-25 121.3 95 65.3
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 2.1e-20 104.8 61 77.0
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 8.1e-20 102.8 123 47.2
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 3.1e-19 100.9 251 30.3
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 2.9e-17 94.4 138 42.8
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 9.3e-16 89.4 142 35.2
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 1.1e-13 82.4 80 48.8
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 2.1e-12 78.2 158 32.9
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 1.4e-11 75.5 47 70.2
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 3.1e-11 74.3 101 41.6
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 6.9e-11 73.2 43 72.1
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 1.2e-10 72.4 56 62.5
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 1.3e-09 68.9 53 62.3
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 6.5e-09 66.6 52 61.5
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 1.4e-08 65.5 53 58.5
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 7.2e-08 63.2 105 37.1
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 7.2e-08 63.2 51 60.8
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 2.1e-07 61.6 41 58.5
Cfa005156 Carpinus fangiana HOM05D000011 ORTHO05D000157 6.1e-07 60.1 99 40.4
Potri.010G096301 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.8e-06 58.5 45 60.0
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 6.7e-06 56.6 34 70.6
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 8.7e-06 56.2 63 42.9


User provided reference genes

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