Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 1.2e-158 563.1 284 100.0
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 2.3e-130 469.2 284 82.4
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 7.0e-127 457.6 322 72.4
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 1.2e-126 456.8 322 72.4
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 5.9e-126 454.5 317 72.6
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 2.2e-125 452.6 322 72.0
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 2.2e-125 452.6 322 72.4
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 2.9e-125 452.2 322 71.1
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 3.8e-125 451.8 322 71.7
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 6.5e-125 451.1 320 72.5
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 6.5e-125 451.1 322 71.1
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 8.5e-125 450.7 322 71.7
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 1.5e-124 449.9 322 71.7
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 1.9e-124 449.5 322 71.1
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 5.5e-124 448.0 322 72.0
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 5.5e-124 448.0 322 72.0
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 3.6e-123 445.3 322 70.5
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 4.7e-123 444.9 276 76.8
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 4.7e-123 444.9 322 69.9
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 6.1e-123 444.5 322 70.8
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 1.4e-122 443.4 322 71.7
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 1.8e-122 443.0 322 70.5
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 4.0e-122 441.8 322 69.9
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 5.2e-122 441.4 322 69.3
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 6.7e-122 441.0 322 70.2
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.1e-121 440.3 322 69.9
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 1.1e-121 440.3 322 70.5
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 1.5e-121 439.9 322 70.8
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 4.4e-121 438.3 322 68.0
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 4.4e-121 438.3 322 69.3
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 3.7e-120 435.3 322 69.3
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 1.4e-119 433.3 322 68.6
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 2.4e-119 432.6 341 66.0
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 2.4e-119 432.6 322 69.3
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 7.0e-119 431.0 322 67.7
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 7.0e-119 431.0 286 74.8
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 2.0e-118 429.5 322 68.0
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 3.5e-118 428.7 322 67.1
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 5.9e-118 427.9 317 68.5
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 5.9e-118 427.9 284 76.8
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 5.9e-118 427.9 378 61.4
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 5.9e-118 427.9 283 76.3
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 5.9e-118 427.9 322 67.7
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 7.7e-118 427.6 322 67.4
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 1.0e-117 427.2 284 76.4
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.7e-117 426.4 322 68.9
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 1.7e-117 426.4 322 67.4
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.7e-117 426.4 322 69.6
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.7e-117 426.4 311 69.8
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 3.8e-117 425.2 322 66.8
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 5.0e-117 424.9 346 64.2
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 1.1e-116 423.7 284 74.3
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 1.5e-116 423.3 322 67.4
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 1.9e-116 422.9 322 66.5
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 3.2e-116 422.2 353 63.2
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 4.2e-116 421.8 322 66.1
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 5.5e-116 421.4 363 62.8
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 9.4e-116 420.6 319 69.3
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 1.2e-115 420.2 322 66.8
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.1e-115 419.5 311 68.5
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 2.7e-115 419.1 271 75.3
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 3.6e-115 418.7 322 67.4
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 8.0e-115 417.5 322 66.1
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 1.4e-114 416.8 322 64.9
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 2.3e-114 416.0 322 67.1
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 4.0e-114 415.2 322 65.5
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 6.8e-114 414.5 321 66.7
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 2.0e-113 412.9 322 64.9
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 5.7e-113 411.4 329 65.0
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 5.7e-113 411.4 328 64.9
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 2.8e-112 409.1 315 66.0
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 4.8e-112 408.3 322 64.9
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 6.3e-112 407.9 347 62.2
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 8.3e-112 407.5 322 66.5
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.4e-111 406.8 321 65.7
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 3.1e-111 405.6 322 64.6
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 7.0e-111 404.4 322 65.2
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 7.0e-111 404.4 322 65.5
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 1.2e-110 403.7 322 65.5
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 1.2e-110 403.7 322 65.5
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.2e-110 403.7 322 66.1
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 2.0e-110 402.9 322 64.9
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 3.5e-110 402.1 322 64.9
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 7.7e-110 401.0 322 64.6
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 1.0e-109 400.6 322 64.9
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 1.3e-109 400.2 322 64.6
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 3.8e-109 398.7 322 64.6
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 5.0e-109 398.3 322 64.0
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 5.0e-109 398.3 322 64.3
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 5.0e-109 398.3 322 64.3
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 6.5e-109 397.9 322 64.0
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 4.2e-108 395.2 322 64.0
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 5.5e-108 394.8 322 63.7
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 7.2e-108 394.4 325 63.7
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 7.2e-108 394.4 320 62.8
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 2.1e-107 392.9 322 64.0
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 2.7e-107 392.5 322 63.7
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 2.3e-106 389.4 342 60.5
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 8.8e-106 387.5 284 68.0
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 3.5e-102 375.6 284 68.3
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.9e-100 369.8 270 68.5
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 9.5e-100 367.5 325 60.0
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 3.7e-96 355.5 306 60.5
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 3.9e-93 345.5 322 58.4
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 6.6e-93 344.7 307 59.3
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 2.1e-91 339.7 307 57.3
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.2e-89 334.0 319 54.9
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 8.3e-88 327.8 540 39.6
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 8.3e-88 327.8 284 59.9
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 1.1e-87 327.4 254 68.1
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.1e-79 300.8 217 72.8
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 1.1e-79 300.8 183 82.0
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.9e-76 290.0 183 80.9
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 6.8e-74 281.6 295 49.8
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 3.2e-71 272.7 340 46.8
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 3.2e-71 272.7 340 46.8
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 6.0e-70 268.5 163 82.2
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 9.6e-60 234.6 126 90.5
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.6e-59 233.8 126 90.5
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 3.4e-57 226.1 480 35.4
SEGI_33957 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 1.1e-52 211.1 126 78.6
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 5.1e-45 185.7 159 59.1
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.9e-44 183.7 96 93.8
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 5.6e-44 182.2 158 58.2
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 2.8e-43 179.9 158 57.6
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.1e-42 177.9 124 73.4
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 3.8e-40 169.5 95 85.3
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 3.6e-30 136.3 298 35.2
SEGI_13462 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 5.7e-28 129.0 94 60.6
Glyma.08G057251 Glycine max HOM05D005071 ORTHO05D006069 1.4e-23 114.4 75 64.0
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.5e-23 113.6 123 52.8
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.5e-23 113.6 123 52.8
SMO364G0565 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 7.2e-23 112.1 171 45.6
Prupe.8G055600 Prunus persica HOM05D005071 ORTHO05D006069 9.4e-23 111.7 76 67.1
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 9.4e-23 111.7 122 51.6
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 3.7e-19 99.8 331 27.2
Sopen03g028940 Solanum pennellii HOM05D005071 ORTHO05D006069 1.8e-18 97.4 75 70.7
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 4.1e-18 96.3 156 42.9
Cfa024692 Carpinus fangiana HOM05D005071 ORTHO05D006069 2.5e-15 87.0 315 27.6
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 4.1e-10 69.7 131 36.6
MD06G1235800 Malus domestica HOM05D005071 ORTHO05D006069 1.6e-09 67.8 201 27.9
Cfa025391 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.7e-08 64.3 158 32.3
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.2e-08 63.9 320 26.2
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 3.2e-07 60.1 322 24.2
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 9.4e-07 58.5 318 25.8
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 1.2e-06 58.2 311 24.4


User provided reference genes

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