Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 6.5e-64 247.3 129 100.0
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 3.0e-53 211.8 126 85.7
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 1.1e-52 209.9 125 83.2
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 6.3e-51 204.1 125 84.8
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 8.2e-51 203.8 126 81.7
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 8.2e-51 203.8 126 83.3
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.4e-50 203.0 125 83.2
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.8e-50 202.6 125 82.4
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.8e-50 202.6 122 83.6
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 2.4e-50 202.2 125 80.8
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 5.3e-50 201.1 120 83.3
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 5.3e-50 201.1 125 81.6
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 5.3e-50 201.1 124 79.8
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 7.0e-50 200.7 126 80.2
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 7.0e-50 200.7 126 80.2
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 7.0e-50 200.7 120 83.3
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 7.0e-50 200.7 126 80.2
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.6e-49 199.5 126 78.6
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.6e-49 199.5 126 82.5
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.6e-49 199.5 126 81.0
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 2.0e-49 199.1 122 81.1
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 2.0e-49 199.1 126 81.0
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 2.0e-49 199.1 120 82.5
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.6e-49 198.7 126 80.2
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 3.5e-49 198.4 123 80.5
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 3.5e-49 198.4 126 79.4
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 3.5e-49 198.4 126 79.4
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 3.5e-49 198.4 126 79.4
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 3.5e-49 198.4 121 82.6
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 4.5e-49 198.0 128 78.9
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 5.9e-49 197.6 127 79.5
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 7.7e-49 197.2 123 82.9
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.3e-48 196.4 129 78.3
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 1.3e-48 196.4 126 77.8
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.7e-48 196.1 126 77.8
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.7e-48 196.1 118 84.7
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.2e-48 195.7 128 75.8
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 2.9e-48 195.3 126 77.8
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 3.8e-48 194.9 123 78.9
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.8e-48 194.9 123 78.9
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 6.5e-48 194.1 123 79.7
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 6.5e-48 194.1 123 78.9
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 8.5e-48 193.7 122 77.9
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 8.5e-48 193.7 125 78.4
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 8.5e-48 193.7 128 78.1
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.5e-48 193.7 122 78.7
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.1e-47 193.4 128 74.2
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.1e-47 193.4 125 76.0
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 1.5e-47 193.0 123 78.9
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 2.5e-47 192.2 125 79.2
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 2.5e-47 192.2 125 79.2
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.2e-47 191.8 125 78.4
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.2e-47 191.8 123 78.0
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 3.2e-47 191.8 120 78.3
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 4.2e-47 191.4 123 76.4
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 7.2e-47 190.7 126 77.0
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 9.4e-47 190.3 128 74.2
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 2.7e-46 188.7 117 80.3
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 3.6e-46 188.3 117 79.5
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 3.6e-46 188.3 117 79.5
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 3.6e-46 188.3 117 79.5
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.6e-46 188.3 117 81.2
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 4.7e-46 188.0 117 78.6
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 4.7e-46 188.0 117 78.6
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 4.7e-46 188.0 124 74.2
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.7e-46 188.0 130 74.6
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 6.1e-46 187.6 119 77.3
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 6.1e-46 187.6 118 78.0
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 6.1e-46 187.6 117 79.5
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 8.0e-46 187.2 117 78.6
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.0e-46 187.2 122 77.0
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.0e-45 186.8 117 78.6
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.4e-45 186.4 120 76.7
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 3.0e-45 185.3 125 76.0
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 3.0e-45 185.3 117 77.8
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 4.0e-45 184.9 120 75.8
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 5.2e-45 184.5 115 78.3
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 6.7e-45 184.1 120 75.0
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 8.8e-45 183.7 116 78.4
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 8.8e-45 183.7 127 75.6
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.8e-45 183.7 123 74.8
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 1.2e-44 183.3 116 77.6
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.2e-44 183.3 126 73.0
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.2e-44 183.3 124 71.8
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.5e-44 183.0 117 76.1
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 2.0e-44 182.6 114 79.8
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 2.6e-44 182.2 117 77.8
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.4e-44 181.4 127 74.8
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 5.7e-44 181.0 110 82.7
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 1.3e-43 179.9 119 73.1
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 1.3e-43 179.9 119 73.1
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.3e-43 179.9 125 71.2
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 2.2e-43 179.1 112 76.8
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 2.2e-43 179.1 110 80.9
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 3.7e-43 178.3 124 72.6
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 8.2e-43 177.2 105 84.8
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 2.4e-42 175.6 119 71.4
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 2.4e-42 175.6 117 75.2
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 4.1e-42 174.9 108 82.4
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 9.1e-42 173.7 118 75.4
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 9.1e-42 173.7 124 74.2
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.0e-40 170.2 124 68.5
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.1e-39 166.8 102 87.3
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.2e-39 165.2 122 69.7
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 5.5e-39 164.5 119 70.6
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 2.1e-38 162.5 101 78.2
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.1e-38 162.5 99 82.8
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 4.7e-38 161.4 120 70.0
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.0e-37 160.2 110 74.5
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 1.0e-37 160.2 98 80.6
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 3.0e-37 158.7 120 69.2
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 3.0e-37 158.7 98 79.6
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 4.4e-36 154.8 102 72.5
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 7.5e-36 154.1 120 67.5
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 1.7e-35 152.9 93 82.8
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.7e-35 151.8 90 82.2
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 6.3e-35 151.0 120 63.3
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 5.4e-34 147.9 120 62.5
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.2e-33 146.7 120 62.5
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 2.0e-33 146.0 112 67.9
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 3.5e-33 145.2 98 74.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 3.5e-33 145.2 98 74.5
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 7.7e-33 144.1 124 62.1
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.3e-32 143.3 119 64.7
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 3.8e-32 141.7 108 66.7
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 3.8e-32 141.7 120 64.2
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.2e-30 136.7 86 79.1
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 4.7e-30 134.8 99 70.7
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 8.0e-30 134.0 121 53.7
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 6.8e-29 131.0 92 69.6
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 8.8e-29 130.6 125 60.0
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.5e-28 129.8 83 75.9
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 2.0e-28 129.4 109 62.4
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 4.4e-28 128.3 104 65.4
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 1.3e-27 126.7 124 52.4
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 2.8e-27 125.6 115 53.9
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 3.7e-27 125.2 83 69.9
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 3.1e-26 122.1 121 48.8
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 3.1e-26 122.1 120 51.7
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.2e-25 120.2 115 51.3
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 2.0e-25 119.4 85 72.9
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 2.7e-25 119.0 114 50.9
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 5.9e-25 117.9 125 56.0
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 5.9e-25 117.9 88 62.5
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 7.8e-25 117.5 117 55.6
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 1.3e-24 116.7 129 50.4
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 2.3e-24 115.9 115 50.4
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.8e-24 115.2 118 54.2
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 8.6e-24 114.0 116 52.6
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.9e-23 112.8 132 48.5
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.5e-23 112.5 77 79.2
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 7.3e-23 110.9 109 52.3
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 9.8e-20 100.5 61 80.3
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.0e-16 90.5 59 72.9
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 2.0e-09 66.2 75 50.7
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 5.0e-08 61.6 57 43.9
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.9e-07 59.7 35 82.9


User provided reference genes

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