Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.7e-246 855.5 431 100.0
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 5.0e-193 677.9 431 80.3
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 9.1e-179 630.6 432 72.2
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.0e-174 615.5 427 71.7
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.5e-173 613.2 427 71.4
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.6e-173 612.5 427 71.0
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 4.5e-170 601.7 429 69.7
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 8.0e-167 590.9 423 68.8
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 1.0e-166 590.5 426 68.5
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 2.3e-166 589.3 423 68.6
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 4.0e-166 588.6 431 68.9
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 6.8e-166 587.8 429 68.5
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.2e-165 587.0 427 68.1
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 1.2e-165 587.0 419 68.5
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 3.4e-165 585.5 423 67.1
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 3.4e-165 585.5 431 67.7
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 2.2e-164 582.8 431 68.4
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 2.8e-164 582.4 423 67.8
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 3.7e-164 582.0 431 67.7
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 6.3e-164 581.3 432 67.8
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 1.4e-163 580.1 423 69.3
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.8e-163 579.7 431 68.9
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 1.8e-163 579.7 431 67.5
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 2.4e-163 579.3 432 67.4
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 2.4e-163 579.3 423 66.9
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 3.1e-163 578.9 431 66.4
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 4.1e-163 578.6 419 67.5
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 1.2e-162 577.0 419 67.8
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 1.2e-162 577.0 431 66.1
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 2.0e-162 576.2 423 67.6
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 2.7e-162 575.9 431 65.9
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 2.7e-162 575.9 440 68.2
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 4.5e-162 575.1 419 67.5
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 7.7e-162 574.3 432 67.1
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 1.3e-161 573.5 431 67.3
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.3e-161 573.5 423 66.4
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.3e-161 573.5 419 67.5
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 1.3e-161 573.5 422 67.5
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.7e-161 573.2 431 65.4
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 2.9e-161 572.4 424 67.5
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 3.8e-161 572.0 419 67.1
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 5.0e-161 571.6 422 67.8
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 5.0e-161 571.6 422 67.8
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.9e-160 569.7 423 65.7
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 3.3e-160 568.9 423 67.4
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 4.2e-160 568.5 423 66.2
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 7.2e-160 567.8 423 66.4
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 1.6e-159 566.6 423 65.7
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.6e-159 566.6 431 65.4
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.1e-159 566.2 423 66.0
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.1e-159 566.2 427 67.0
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 3.6e-159 565.5 431 65.7
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 4.7e-159 565.1 431 66.6
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 6.1e-159 564.7 423 66.2
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 8.0e-159 564.3 423 66.2
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.3e-158 562.8 423 67.4
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 3.0e-158 562.4 431 65.7
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 2.0e-157 559.7 434 67.3
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 4.4e-157 558.5 424 66.5
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.3e-156 557.0 423 65.7
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 1.7e-156 556.6 491 60.5
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 6.3e-156 554.7 423 65.7
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 3.1e-155 552.4 423 65.7
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 9.2e-155 550.8 432 65.3
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 9.2e-155 550.8 423 65.5
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 1.2e-154 550.4 431 63.3
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 1.2e-154 550.4 427 66.0
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 1.2e-154 550.4 424 65.1
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.7e-154 549.3 413 65.6
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 5.9e-154 548.1 423 65.2
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 5.9e-154 548.1 423 65.2
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 5.9e-154 548.1 423 65.2
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 5.9e-154 548.1 427 65.6
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 5.9e-154 548.1 413 65.1
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 7.8e-154 547.7 423 65.2
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.0e-153 547.4 415 64.8
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 1.0e-153 547.4 423 64.8
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.3e-153 547.0 423 65.5
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.7e-153 546.6 423 66.4
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 2.3e-153 546.2 423 65.0
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 2.3e-153 546.2 423 65.5
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 2.3e-153 546.2 423 65.0
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 2.9e-153 545.8 428 62.4
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 2.9e-153 545.8 423 65.2
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 5.0e-153 545.0 423 65.0
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 5.0e-153 545.0 427 64.4
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 6.6e-153 544.7 423 64.5
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 8.6e-153 544.3 423 65.2
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.1e-152 543.9 424 63.9
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 7.3e-152 541.2 431 64.0
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 9.5e-152 540.8 431 64.3
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 9.5e-152 540.8 427 63.7
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.1e-151 539.7 424 64.4
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 3.6e-151 538.9 427 64.4
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 1.0e-150 537.3 423 63.6
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 5.2e-150 535.0 428 62.9
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 6.8e-150 534.6 424 63.0
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.2e-149 533.9 373 70.8
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 1.5e-149 533.5 423 63.8
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.7e-148 530.0 423 63.6
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 3.2e-147 525.8 432 61.3
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 7.0e-147 524.6 427 62.1
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 2.7e-146 522.7 374 70.1
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 3.5e-146 522.3 424 63.2
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 4.6e-146 521.9 423 62.9
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 3.0e-145 519.2 427 63.0
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 7.3e-144 514.6 423 62.2
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.2e-143 513.8 421 62.0
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 2.8e-143 512.7 423 62.4
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 8.0e-143 511.1 423 62.2
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 2.0e-141 506.5 423 60.0
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 9.2e-139 497.7 428 59.3
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 2.1e-138 496.5 373 67.8
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 6.0e-138 495.0 428 58.9
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 1.0e-137 494.2 431 60.8
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 2.1e-130 469.9 424 55.7
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 3.5e-130 469.2 335 69.3
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 3.5e-130 469.2 428 55.8
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 7.8e-130 468.0 426 54.5
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 8.4e-124 448.0 427 54.1
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 7.1e-123 444.9 435 53.8
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 6.9e-118 428.3 419 54.4
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.5e-117 427.2 337 64.1
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 1.9e-104 383.6 411 51.1
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 4.9e-100 369.0 335 56.7
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 9.3e-99 364.8 310 61.3
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 1.6e-95 354.0 289 64.0
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.6e-95 354.0 440 43.4
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 6.2e-95 352.1 295 59.7
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 1.1e-94 351.3 429 45.2
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.5e-88 330.9 436 46.8
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 3.8e-84 316.2 439 42.4
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 6.7e-81 305.4 430 42.3
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 4.4e-72 276.2 159 82.4
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 1.7e-71 274.2 173 77.5
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 1.5e-69 267.7 275 54.2
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 4.5e-69 266.2 177 72.9
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 3.8e-68 263.1 464 36.9
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 4.7e-58 229.6 208 58.2
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 2.0e-56 224.2 159 66.0
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 7.2e-51 205.7 151 64.2
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.7e-50 203.0 235 45.5
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 8.0e-50 202.2 113 83.2
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.0e-49 201.8 181 55.2
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 1.8e-49 201.1 134 73.1
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 2.0e-45 187.6 366 34.2
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 1.1e-30 138.7 92 72.8
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 7.3e-27 125.9 115 58.3
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 1.1e-22 112.1 97 60.8
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 4.0e-17 93.6 309 27.8
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 8.9e-17 92.4 70 61.4
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 7.1e-14 82.8 84 52.4
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.6e-13 81.6 57 73.7


User provided reference genes

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