Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 2091.6 1046 100.0
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1463.4 1123 66.4
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1410.2 1117 64.1
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1397.5 1130 63.3
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1386.3 1121 62.3
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1384.0 1117 62.8
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1378.2 1117 63.0
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1369.4 1054 65.9
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1364.0 1110 62.8
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1360.9 1127 61.8
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1359.7 1110 62.6
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1355.5 1116 60.8
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1341.6 1133 61.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1341.3 1127 60.4
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1340.5 1111 61.2
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1340.5 1148 60.7
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1334.7 1112 61.1
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1330.9 1114 61.1
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1326.2 1103 61.3
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1325.8 1103 61.7
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1317.0 1116 60.3
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1315.4 1103 61.2
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1312.4 1116 60.0
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1311.6 1116 60.3
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1308.5 1101 60.8
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1307.7 1117 59.6
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1305.4 1109 60.5
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1303.1 1115 60.2
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1302.7 1064 63.6
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1299.3 1111 59.5
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1298.5 1107 59.6
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1297.7 1173 56.8
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1294.6 1148 58.2
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1290.8 1117 58.7
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1283.9 1103 59.3
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1281.5 1116 58.7
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1273.8 1115 59.8
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1270.4 1112 58.4
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1269.2 1112 58.5
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1268.8 1149 58.3
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1268.4 1173 57.1
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1268.1 1115 58.8
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1265.8 1127 57.7
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1264.6 1082 60.7
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1262.7 1115 58.9
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1260.0 1119 58.0
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1257.7 1117 57.8
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1255.7 1112 57.9
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1254.6 1114 58.0
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1253.4 1123 57.4
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1252.7 1165 56.9
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1251.9 1114 57.8
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1251.1 1097 58.9
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1250.0 1114 57.8
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1249.6 1114 57.6
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1248.0 1114 57.6
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1247.6 1114 57.5
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1245.7 1116 59.1
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1243.0 1117 59.3
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1241.1 1169 55.4
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1238.0 1111 57.2
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1235.7 1116 56.6
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1233.8 1104 58.8
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1225.7 839 72.1
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1223.0 1133 55.7
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1217.6 1062 59.9
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1211.4 1188 54.9
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1205.7 1122 55.2
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1205.3 1122 55.1
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1195.6 1131 55.8
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1194.1 1189 53.8
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1179.1 1078 56.8
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1177.2 1078 56.7
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1164.4 1078 56.4
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1162.1 1129 55.0
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1158.7 998 59.6
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1157.5 1119 54.7
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1152.1 793 71.4
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1149.8 983 60.1
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1136.7 956 60.8
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1133.2 1112 53.9
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1127.5 1093 54.4
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1124.0 1108 53.2
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1116.7 1115 53.5
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1116.3 1006 59.2
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1115.5 1111 53.9
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1115.5 1111 53.9
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1112.1 1119 53.2
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1112.1 1124 53.1
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1110.5 1104 53.3
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1109.7 839 66.0
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1103.6 1107 53.1
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1103.2 957 59.0
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1101.3 1090 53.8
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1097.8 1114 51.6
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1094.0 1108 52.3
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1088.9 1092 53.2
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1083.9 1104 52.5
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1077.0 1107 52.4
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1076.2 755 70.3
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1075.8 1132 51.2
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 1.4e-311 1073.2 1113 52.2
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 3.6e-311 1071.6 1125 51.6
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.4e-310 1068.9 895 61.2
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 2.5e-307 1058.9 959 56.9
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 4.0e-297 1025.0 953 57.6
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 2.3e-292 1009.2 1085 50.4
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 3.7e-282 975.3 1129 47.1
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 7.9e-269 931.0 951 52.7
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 6.5e-263 911.4 644 69.1
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.9e-252 875.5 1117 45.4
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.7e-244 848.2 1117 43.9
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 5.3e-241 838.6 999 46.8
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 2.4e-233 813.1 798 53.5
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 2.8e-226 789.6 1039 42.7
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 1.5e-211 740.7 817 48.2
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 8.9e-188 661.8 1046 39.6
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 4.2e-185 652.9 959 40.8
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 3.3e-166 590.1 1067 36.9
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 3.2e-161 573.5 406 69.5
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 1.8e-151 541.2 482 56.4
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.5e-134 485.0 516 50.8
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.4e-116 425.2 339 62.8
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.8e-103 381.7 447 47.9
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 2.9e-101 374.4 309 60.5
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 7.5e-94 349.7 1170 25.6
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.3e-73 280.0 226 61.9
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.1e-67 261.9 261 55.9
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 3.5e-67 261.2 381 40.9
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.7e-66 258.8 258 57.0
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.1e-59 235.3 203 56.2
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.3e-58 231.9 210 59.0
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 4.3e-57 227.6 211 55.5
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.6e-56 225.7 224 55.8
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 7.1e-52 210.3 367 38.7
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 2.9e-45 188.3 391 34.8
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.7e-43 181.8 243 45.3
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.1e-42 177.6 175 54.9
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.1e-42 177.6 175 54.9
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.1e-42 177.6 175 54.9
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-41 176.0 175 54.3
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.3e-41 174.5 175 54.3
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 5.5e-36 157.5 143 53.1
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.3e-32 144.1 175 48.0
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 7.7e-30 137.1 362 30.4
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.6e-22 112.1 103 57.3
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 8.0e-19 100.5 171 35.7
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 8.0e-19 100.5 171 35.7
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 8.0e-19 100.5 171 35.7
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 8.0e-19 100.5 240 32.9
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 1.1e-17 96.7 76 56.6
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 3.3e-17 95.1 299 27.1
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.1e-15 90.1 58 62.1
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.8e-15 89.4 73 58.9
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.8e-15 89.4 129 37.2
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 2.2e-13 82.4 55 70.9
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.8e-10 72.8 72 50.0


User provided reference genes

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