Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 3.4e-86 321.6 161 100.0
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 6.8e-71 270.8 158 81.6
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 3.4e-70 268.5 158 82.9
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 3.4e-70 268.5 161 82.6
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 7.6e-70 267.3 158 82.3
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 9.9e-70 266.9 158 82.3
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 9.9e-70 266.9 158 82.3
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 1.7e-69 266.2 155 84.5
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 2.2e-69 265.8 158 81.6
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 6.4e-69 264.2 155 83.2
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 8.4e-69 263.8 158 81.6
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 8.4e-69 263.8 160 80.6
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.4e-68 262.3 160 78.8
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 4.1e-68 261.5 158 80.4
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.4e-68 261.2 158 79.7
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 5.4e-68 261.2 155 80.6
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 9.2e-68 260.4 155 80.6
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.2e-67 260.0 158 79.7
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.2e-67 260.0 158 82.3
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.2e-67 260.0 155 79.4
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 1.6e-67 259.6 158 79.7
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.6e-67 259.6 154 79.9
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.6e-67 259.6 154 79.9
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.1e-67 259.2 155 80.6
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 2.7e-67 258.8 154 82.5
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 3.5e-67 258.5 158 78.5
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 4.6e-67 258.1 158 80.4
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 6.0e-67 257.7 158 78.5
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 7.8e-67 257.3 158 79.1
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 1.0e-66 256.9 157 78.3
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.3e-66 256.5 155 79.4
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.3e-66 256.5 158 78.5
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 2.3e-66 255.8 158 79.1
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 2.3e-66 255.8 154 79.2
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 3.0e-66 255.4 158 79.1
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.0e-66 255.4 158 79.1
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.0e-66 255.4 158 79.1
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.0e-66 255.4 158 79.1
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.0e-66 255.4 158 79.1
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.0e-66 255.4 158 79.1
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 3.0e-66 255.4 154 79.9
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.1e-66 254.6 158 78.5
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 6.6e-66 254.2 156 78.2
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 8.6e-66 253.8 154 81.2
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 8.6e-66 253.8 154 81.8
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 1.1e-65 253.4 155 78.7
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.1e-65 253.4 154 81.2
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 1.5e-65 253.1 154 78.6
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.5e-65 253.1 156 78.2
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.9e-65 252.7 156 79.5
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 4.3e-65 251.5 158 77.8
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 5.6e-65 251.1 158 77.8
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 5.6e-65 251.1 154 80.5
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 9.6e-65 250.4 154 78.6
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.2e-64 250.0 153 80.4
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 1.2e-64 250.0 154 77.3
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.6e-64 249.6 156 80.1
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.6e-64 249.6 156 80.1
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 2.8e-64 248.8 157 76.4
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 3.6e-64 248.4 155 77.4
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 6.2e-64 247.7 153 79.1
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 8.1e-64 247.3 157 76.4
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.4e-63 246.5 155 76.8
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 157 77.7
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.8e-63 246.1 155 76.8
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 158 76.6
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.8e-63 246.1 158 76.6
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 153 77.8
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 2.4e-63 245.7 151 78.1
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 2.4e-63 245.7 153 77.1
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 3.1e-63 245.4 153 77.1
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 9.0e-63 243.8 155 73.5
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.2e-62 243.4 158 75.9
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.2e-62 243.4 158 74.7
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.5e-62 243.0 158 74.7
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 2.0e-62 242.7 155 78.7
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 2.6e-62 242.3 158 72.2
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 3.4e-62 241.9 157 73.9
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 3.4e-62 241.9 158 75.3
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 3.4e-62 241.9 157 75.2
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 4.4e-62 241.5 158 74.1
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 4.4e-62 241.5 156 75.0
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 7.6e-62 240.7 158 74.7
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 7.6e-62 240.7 157 75.8
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 7.6e-62 240.7 157 75.8
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 9.9e-62 240.4 156 75.0
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.7e-61 239.6 158 74.7
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 3.8e-61 238.4 144 80.6
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 3.8e-61 238.4 153 75.2
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 4.9e-61 238.0 158 73.4
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 8.4e-61 237.3 158 70.9
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 8.4e-61 237.3 156 73.7
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.4e-60 236.5 158 72.2
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 4.2e-60 235.0 158 74.1
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 4.2e-60 235.0 158 74.1
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 4.2e-60 235.0 158 74.1
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 4.2e-60 235.0 158 74.1
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 4.2e-60 235.0 158 74.1
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 7.1e-60 234.2 150 76.0
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 9.3e-60 233.8 158 71.5
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.6e-59 233.0 158 72.2
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 2.7e-59 232.3 150 75.3
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 3.5e-59 231.9 149 75.8
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 3.5e-59 231.9 149 75.8
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 3.5e-59 231.9 149 75.8
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 6.0e-59 231.1 150 74.7
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 6.0e-59 231.1 154 73.4
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 5.1e-58 228.0 161 68.9
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.9e-57 226.1 203 59.6
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 2.5e-57 225.7 158 69.0
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.6e-56 223.0 155 68.4
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.8e-55 219.5 244 52.0
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 4.0e-55 218.4 143 74.8
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 4.5e-54 214.9 142 73.2
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 7.6e-54 214.2 135 78.5
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 8.4e-53 210.7 123 82.9
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 3.2e-52 208.8 125 80.0
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 4.2e-52 208.4 145 66.2
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 1.8e-50 203.0 145 65.5
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 3.9e-50 201.8 194 55.7
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 8.7e-50 200.7 159 62.9
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 4.3e-49 198.4 208 51.4
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 2.0e-46 189.5 158 59.5
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.0e-46 189.5 160 59.4
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.7e-45 186.4 301 39.2
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 2.2e-45 186.0 112 76.8
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 5.5e-44 181.4 142 66.9
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 2.5e-41 172.6 109 76.1
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.1e-33 147.1 133 57.1
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.1e-33 147.1 93 77.4
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 2.2e-32 142.9 107 68.2
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 2.8e-32 142.5 98 73.5
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.0e-30 136.3 149 47.7
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.0e-29 134.0 149 47.0
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 3.8e-29 132.1 154 44.8
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 3.6e-27 125.6 145 54.5
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 7.9e-27 124.4 77 75.3
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 7.9e-27 124.4 152 43.4
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.9e-26 122.1 121 53.7
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 3.3e-25 119.0 143 45.5
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.1e-23 112.5 132 43.9
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.5e-22 108.6 96 59.4
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.5e-22 108.6 96 59.4
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 4.5e-22 108.6 65 78.5
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 3.8e-21 105.5 65 75.4
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.0e-21 105.1 65 75.4
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 7.2e-20 101.3 84 60.7
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 4.7e-19 98.6 101 58.4
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.0e-18 97.4 84 58.3
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.8e-18 96.7 144 38.2
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 5.1e-18 95.1 78 64.1
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 5.2e-10 68.6 156 33.3
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 2.2e-08 63.2 69 50.7
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 6.3e-08 61.6 69 49.3
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 2.6e-06 56.2 43 65.1
AT3G57900 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 7.7e-06 54.7 96 36.5


User provided reference genes

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