Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013469 Daucus carota HOM05D004588 ORTHO05D005365 6.2e-48 193.7 94 100.0
Dinv31498 Davidia involucrata HOM05D004588 ORTHO05D005365 9.0e-23 110.2 54 100.0
unitig_26.g9124 Utricularia gibba HOM05D000513 ORTHO05D003825 1.2e-22 109.8 66 81.8
Lsat_1_v5_gn_4_185681 Lactuca sativa HOM05D004588 ORTHO05D005365 7.6e-22 107.1 54 98.1
SGA_v2.0_scaffold21G09593 Striga asiatica HOM05D004588 ORTHO05D005365 1.0e-21 106.7 54 96.3
SGA_v2.0_scaffold272G46369 Striga asiatica HOM05D004588 ORTHO05D005365 1.0e-21 106.7 54 96.3
MSTRG.19411 Avicennia marina HOM05D004588 ORTHO05D005365 1.3e-21 106.3 54 96.3
CDE02G2168 Ceratophyllum demersum HOM05D002987 ORTHO05D003359 1.3e-21 106.3 54 96.3
Cc06_g23660 Coffea canephora HOM05D004588 ORTHO05D005365 1.3e-21 106.3 54 96.3
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 1.3e-21 106.3 54 96.3
CDE04G0148 Ceratophyllum demersum HOM05D004588 ORTHO05D005365 2.9e-21 105.1 54 94.4
Nitab4.5_0004827g0050 Nicotiana tabacum HOM05D004588 ORTHO05D005365 2.9e-21 105.1 54 94.4
HanXRQChr06g0184041 Helianthus annuus HOM05D004588 ORTHO05D005365 3.8e-21 104.8 54 96.3
Aqoxy7G03968 Aquilegia oxysepala HOM05D004588 ORTHO05D005365 4.9e-21 104.4 54 92.6
AUR62002237 Chenopodium quinoa HOM05D004588 ORTHO05D005365 6.5e-21 104.0 54 92.6
AUR62015449 Chenopodium quinoa HOM05D004588 ORTHO05D005365 6.5e-21 104.0 54 92.6
Duzib248G0295 Durio zibethinus HOM05D004588 ORTHO05D005365 6.5e-21 104.0 54 94.4
Peaxi162Scf00474g00216 Petunia axillaris HOM05D004588 ORTHO05D005365 6.5e-21 104.0 54 92.6
SalBow6G0192 Salvia bowleyana HOM05D004588 ORTHO05D005365 6.5e-21 104.0 54 94.4
Hund04573 Selenicereus undatus HOM05D004588 ORTHO05D005365 6.5e-21 104.0 54 92.6
GSVIVG01034226001 Vitis vinifera HOM05D004588 ORTHO05D005365 6.5e-21 104.0 54 94.4
GSVIVG01034243001 Vitis vinifera HOM05D004588 ORTHO05D005365 6.5e-21 104.0 54 94.4
vmacro20736 Vaccinium macrocarpon HOM05D004588 ORTHO05D005365 8.4e-21 103.6 54 92.6
MD11G1162200 Malus domestica HOM05D004588 ORTHO05D005365 1.1e-20 103.2 54 94.4
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 1.4e-20 102.8 54 90.7
BcaNung06952 Brassica carinata HOM05D004588 ORTHO05D005365 1.4e-20 102.8 54 92.6
A05p30670 Brassica napus HOM05D004588 ORTHO05D005365 1.4e-20 102.8 54 92.6
C05p46550 Brassica napus HOM05D004588 ORTHO05D005365 1.4e-20 102.8 54 92.6
BolC5t33384H Brassica oleracea HOM05D004588 ORTHO05D005365 1.4e-20 102.8 54 92.6
BraA05t21909Z Brassica rapa HOM05D004588 ORTHO05D005365 1.4e-20 102.8 54 92.6
Cpa.g.sc91.70 Carica papaya HOM05D004588 ORTHO05D005365 1.4e-20 102.8 54 92.6
Nn5g26959 Nelumbo nucifera HOM05D004588 ORTHO05D005365 1.4e-20 102.8 54 90.7
Hma1.2p1_0391F.1_g142890 Hydrangea macrophylla HOM05D004588 ORTHO05D005365 1.9e-20 102.4 54 92.6
Prupe.6G124600 Prunus persica HOM05D004588 ORTHO05D005365 1.9e-20 102.4 54 94.4
BcaB04g17345 Brassica carinata HOM05D004588 ORTHO05D005365 2.5e-20 102.1 54 90.7
C08p04210 Brassica napus HOM05D004588 ORTHO05D005365 2.5e-20 102.1 54 90.7
Thhalv10011874m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 2.5e-20 102.1 54 90.7
PGR044G1699 Punica granatum HOM05D004588 ORTHO05D005365 2.5e-20 102.1 54 94.4
Sp1g36240 Schrenkiella parvula HOM05D004588 ORTHO05D005365 2.5e-20 102.1 54 90.7
Sc15g0007280 Simmondsia chinensis HOM05D004588 ORTHO05D005365 2.5e-20 102.1 54 90.7
Aa31LG8G5720 Aethionema arabicum HOM05D004588 ORTHO05D005365 3.2e-20 101.7 54 90.7
arahy.Tifrunner.gnm1.ann1.7DYL36 Arachis hypogaea HOM05D004588 ORTHO05D005365 3.2e-20 101.7 54 90.7
arahy.Tifrunner.gnm1.ann1.7K7KM4 Arachis hypogaea HOM05D004588 ORTHO05D005365 3.2e-20 101.7 54 90.7
BcaB06g25942 Brassica carinata HOM05D004588 ORTHO05D005365 3.2e-20 101.7 54 90.7
Thhalv10021804m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 3.2e-20 101.7 54 90.7
Nitab4.5_0000170g0150 Nicotiana tabacum HOM05D004588 ORTHO05D005365 3.2e-20 101.7 54 90.7
TWI74G0566 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 3.2e-20 101.7 54 90.7
MBI13_g33575_MAGBIO Magnolia biondii HOM05D004588 ORTHO05D005365 4.2e-20 101.3 54 88.9
MD03G1139600 Malus domestica HOM05D004588 ORTHO05D005365 4.2e-20 101.3 54 92.6
Oeu008630.1 Olea europaea HOM05D004588 ORTHO05D005365 4.2e-20 101.3 54 88.9
PSO170G5232 Papaver somniferum HOM05D004588 ORTHO05D005365 4.2e-20 101.3 54 87.0
PSO407G0251 Papaver somniferum HOM05D004588 ORTHO05D005365 4.2e-20 101.3 54 87.0
QL11p006982 Quercus lobata HOM05D004588 ORTHO05D005365 4.2e-20 101.3 54 92.6
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 5.5e-20 100.9 54 92.6
Atru.chr8.89 Acer truncatum HOM05D004588 ORTHO05D005365 5.5e-20 100.9 54 92.6
ClCG07G006010 Citrullus lanatus HOM05D004588 ORTHO05D005365 5.5e-20 100.9 54 92.6
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 5.5e-20 100.9 54 90.7
MELO3C026421.2 Cucumis melo HOM05D004588 ORTHO05D005365 5.5e-20 100.9 54 92.6
CsaV3_4G009740 Cucumis sativus L. HOM05D004588 ORTHO05D005365 5.5e-20 100.9 54 92.6
Sp3g16980 Schrenkiella parvula HOM05D004588 ORTHO05D005365 5.5e-20 100.9 54 88.9
Solyc12g009380.2 Solanum lycopersicum HOM05D004588 ORTHO05D005365 5.5e-20 100.9 54 88.9
Sopen12g004370 Solanum pennellii HOM05D004588 ORTHO05D005365 5.5e-20 100.9 54 88.9
PGSC0003DMG400002922 Solanum tuberosum HOM05D004588 ORTHO05D005365 5.5e-20 100.9 54 88.9
TWI53G1560 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 5.5e-20 100.9 54 90.7
Ah.07g207540 Amaranthus hybridus HOM05D004588 ORTHO05D005365 7.1e-20 100.5 54 90.7
AL1G56520 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 7.1e-20 100.5 54 88.9
AL1G56550 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 7.1e-20 100.5 54 88.9
Carub.0001s3858 Capsella rubella HOM05D004588 ORTHO05D005365 7.1e-20 100.5 54 88.9
CARHR039400 Cardamine hirsuta HOM05D004588 ORTHO05D005365 7.1e-20 100.5 54 88.9
Dinv12627 Davidia involucrata HOM05D004588 ORTHO05D005365 7.1e-20 100.5 54 92.6
Manes.01G180900 Manihot esculenta HOM05D004588 ORTHO05D005365 7.1e-20 100.5 54 92.6
Potri.006G080200 Populus trichocarpa HOM05D004588 ORTHO05D005365 7.1e-20 100.5 54 92.6
Sabra06G0060700 Salix brachista HOM05D004588 ORTHO05D005365 7.1e-20 100.5 54 92.6
Zm00001eb176930 Zea mays HOM05D004588 ORTHO05D005365 7.1e-20 100.5 54 88.9
COL.COLO4_31171 Corchorus olitorius HOM05D004588 ORTHO05D005365 9.3e-20 100.1 54 90.7
Gohir.A05G279932 Gossypium hirsutum HOM05D004588 ORTHO05D005365 9.3e-20 100.1 54 88.9
Lalb_Chr02g0150391 Lupinus albus HOM05D004588 ORTHO05D005365 9.3e-20 100.1 54 90.7
Lalb_Chr06g0169291 Lupinus albus HOM05D004588 ORTHO05D005365 9.3e-20 100.1 54 90.7
Aa31LG10G4590 Aethionema arabicum HOM05D004588 ORTHO05D005365 1.2e-19 99.8 54 88.9
AT1G49400 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 1.2e-19 99.8 54 87.0
arahy.Tifrunner.gnm1.ann1.HQTU6U Arachis hypogaea HOM05D004588 ORTHO05D005365 1.2e-19 99.8 54 88.9
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 1.2e-19 99.8 54 88.9
Sed0013564 Sechium edule HOM05D004588 ORTHO05D005365 1.2e-19 99.8 54 90.7
Thecc.02G231300 Theobroma cacao HOM05D004588 ORTHO05D005365 1.2e-19 99.8 54 90.7
TAR626G1307 Trochodendron aralioides HOM05D004588 ORTHO05D005365 1.2e-19 99.8 54 88.9
FvH4_5g34540 Fragaria vesca HOM05D004588 ORTHO05D005365 1.6e-19 99.4 54 90.7
FAN04G2398 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.6e-19 99.4 54 90.7
FAN04G2743 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.6e-19 99.4 54 90.7
FAN05G0480 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.6e-19 99.4 54 90.7
FAN08G2577 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.6e-19 99.4 54 90.7
FAN09G1784 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.6e-19 99.4 54 90.7
FAN18G1354 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.6e-19 99.4 54 90.7
Lj4g0014219 Lotus japonicus HOM05D004588 ORTHO05D005365 1.6e-19 99.4 54 90.7
Os08g0359600 Oryza sativa ssp. japonica HOM05D004588 ORTHO05D005365 1.6e-19 99.4 54 88.9
AL3G32270 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 2.1e-19 99.0 54 88.9
CSS0028506 Camellia sinensis var. sinensis HOM05D004588 ORTHO05D005365 2.1e-19 99.0 57 87.7
RcHm_v2.0_Chr7g0235191 Rosa chinensis HOM05D004588 ORTHO05D005365 2.1e-19 99.0 54 90.7
THA.LOC104798808 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 2.1e-19 99.0 54 88.9
THA.LOC104800355 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 2.1e-19 99.0 54 87.0
Actinidia29985 Actinidia chinensis HOM05D004588 ORTHO05D005365 2.7e-19 98.6 54 90.7
FAN14G2878 Fragaria x ananassa HOM05D004588 ORTHO05D005365 2.7e-19 98.6 54 90.7
Potri.018G150100 Populus trichocarpa HOM05D004588 ORTHO05D005365 2.7e-19 98.6 54 90.7
Prupe.1G001800 Prunus persica HOM05D004588 ORTHO05D005365 3.5e-19 98.2 54 90.7
Ca_10717_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 4.6e-19 97.8 54 88.9
Ca_20351_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 4.6e-19 97.8 54 88.9
Medtr4g014360 Medicago truncatula HOM05D004588 ORTHO05D005365 4.6e-19 97.8 54 87.0
Medtr6g005030 Medicago truncatula HOM05D004588 ORTHO05D005365 4.6e-19 97.8 54 87.0
Oeu036964.1 Olea europaea HOM05D004588 ORTHO05D005365 4.6e-19 97.8 54 85.2
TPR.G5271 Trifolium pratense HOM05D004588 ORTHO05D005365 4.6e-19 97.8 54 88.9
Actinidia38537 Actinidia chinensis HOM05D004588 ORTHO05D005365 6.0e-19 97.4 54 88.9
CiPaw.01G111800 Carya illinoinensis HOM05D004588 ORTHO05D005365 6.0e-19 97.4 54 88.9
FAN13G2885 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.0e-19 97.4 54 88.9
Gohir.D05G281600 Gossypium hirsutum HOM05D004588 ORTHO05D005365 6.0e-19 97.4 54 87.0
Gorai.009G295100 Gossypium raimondii HOM05D004588 ORTHO05D005365 6.0e-19 97.4 54 87.0
Zm00001eb041040 Zea mays HOM05D004588 ORTHO05D005365 7.9e-19 97.1 54 87.0
HPP92_001963 Vanilla planifolia HOM05D004588 ORTHO05D005365 1.3e-18 96.3 54 87.0
Psat0s11495g0040 Pisum sativum HOM05D004588 ORTHO05D005365 2.3e-18 95.5 54 87.0
Psat2g183160 Pisum sativum HOM05D004588 ORTHO05D005365 2.3e-18 95.5 54 87.0
Glyma.18G206300 Glycine max HOM05D004588 ORTHO05D005365 3.0e-18 95.1 54 87.0
Glyma.01G125100 Glycine max HOM05D004588 ORTHO05D005365 3.9e-18 94.7 54 87.0
Phvul.008G093100 Phaseolus vulgaris HOM05D004588 ORTHO05D005365 3.9e-18 94.7 54 85.2
AT3G18880 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 6.7e-18 94.0 54 83.3
Glyma.07G155900 Glycine max HOM05D004588 ORTHO05D005365 6.7e-18 94.0 54 85.2
VMungo1383G1103 Vigna mungo HOM05D004588 ORTHO05D005365 6.7e-18 94.0 54 85.2
Psat0s5319g0080 Pisum sativum HOM05D004588 ORTHO05D005365 8.7e-18 93.6 54 85.2
arahy.Tifrunner.gnm1.ann1.2BL1F5 Arachis hypogaea HOM05D004588 ORTHO05D005365 1.5e-17 92.8 54 83.3
Psat0s5319g0120 Pisum sativum HOM05D004588 ORTHO05D005365 1.5e-17 92.8 54 85.2
Psat2g183080 Pisum sativum HOM05D004588 ORTHO05D005365 1.5e-17 92.8 54 85.2
ECA238G1741 Erigeron canadensis HOM05D004588 ORTHO05D005365 3.3e-17 91.7 54 83.3
Rhsim01G0103600 Rhododendron simsii HOM05D004588 ORTHO05D005365 4.3e-17 91.3 48 89.6
RhsimUnG0238800 Rhododendron simsii HOM05D004588 ORTHO05D005365 4.3e-17 91.3 48 89.6
TAR383G0700 Trochodendron aralioides HOM05D004588 ORTHO05D005365 4.3e-17 91.3 48 89.6
SEGI_39311 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 2.8e-16 88.6 54 79.6
Psat7g249240 Pisum sativum HOM05D004588 ORTHO05D005365 6.3e-16 87.4 48 87.5
SEGI_30295 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 8.2e-16 87.0 54 77.8
Nitab4.5_0000073g0450 Nicotiana tabacum HOM05D004588 ORTHO05D005365 1.3e-13 79.7 39 94.9
Mapoly0128s0026 Marchantia polymorpha HOM05D004588 ORTHO05D005365 5.0e-13 77.8 54 70.4
BcaC07g37057 Brassica carinata HOM05D004588 ORTHO05D005365 1.1e-12 76.6 40 95.0
BolC8t47225H Brassica oleracea HOM05D004588 ORTHO05D005365 1.1e-12 76.6 40 95.0
SMO230G0073 Selaginella moellendorffii HOM05D004588 ORTHO05D005365 1.9e-12 75.9 54 64.8
AagrBONN_evm.TU.Sc2ySwM_362.494 Anthoceros agrestis HOM05D004588 ORTHO05D005365 5.5e-12 74.3 53 66.0
Pp3c1_39230 Physcomitrium patens HOM05D004588 ORTHO05D005365 2.1e-11 72.4 53 67.9
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 1.0e-10 70.1 53 64.2
arahy.Tifrunner.gnm1.ann1.8LR1I7 Arachis hypogaea HOM05D004588 ORTHO05D005365 2.5e-09 65.5 44 63.6
MCO14G513 Micromonas commoda HOM05D004588 ORTHO05D005365 2.8e-08 62.0 54 51.9
PGSC0003DMG400002924 Solanum tuberosum HOM05D004588 ORTHO05D005365 1.1e-07 60.1 55 58.2
AUR62001361 Chenopodium quinoa HOM05D004588 ORTHO05D005365 5.3e-07 57.8 32 90.6


User provided reference genes

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