Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013409 Daucus carota HOM05D007282 ORTHO05D009214 2.3e-102 375.6 189 100.0
PGR142G4217 Punica granatum HOM05D007282 ORTHO05D009214 2.3e-49 199.5 183 60.7
Peaxi162Scf00069g00612 Petunia axillaris HOM05D007282 ORTHO05D009214 1.2e-47 193.7 189 58.7
vmacro07443 Vaccinium macrocarpon HOM05D007282 ORTHO05D009214 1.6e-47 193.4 191 57.1
CSS0014712 Camellia sinensis var. sinensis HOM05D007282 ORTHO05D009214 2.1e-47 193.0 161 65.8
CSS0036453 Camellia sinensis var. sinensis HOM05D007282 ORTHO05D009214 2.1e-47 193.0 161 65.8
SalBow3G4659 Salvia bowleyana HOM05D007282 ORTHO05D009214 4.7e-47 191.8 171 60.8
Hma1.2p1_0769F.1_g215750 Hydrangea macrophylla HOM05D007282 ORTHO05D009214 6.2e-47 191.4 166 61.4
Migut.J01006 Erythranthe guttata HOM05D007282 ORTHO05D009214 1.8e-46 189.9 161 62.7
Eucgr.K02566 Eucalyptus grandis HOM05D007282 ORTHO05D009214 3.1e-46 189.1 121 75.2
Dinv21175 Davidia involucrata HOM05D007282 ORTHO05D009214 5.2e-46 188.3 190 58.9
TAR623G0904 Trochodendron aralioides HOM05D007282 ORTHO05D009214 2.0e-45 186.4 150 64.7
Rhsim03G0070300 Rhododendron simsii HOM05D007282 ORTHO05D009214 3.4e-45 185.7 196 58.2
Duzib093G1732 Durio zibethinus HOM05D007282 ORTHO05D009214 2.2e-44 183.0 139 68.3
Glyma.02G201500 Glycine max HOM05D007282 ORTHO05D009214 3.8e-44 182.2 157 60.5
Gohir.D09G133600 Gossypium hirsutum HOM05D007282 ORTHO05D009214 4.9e-44 181.8 170 60.0
Gorai.006G153100 Gossypium raimondii HOM05D007282 ORTHO05D009214 8.4e-44 181.0 170 59.4
Manes.08G027500 Manihot esculenta HOM05D000972 ORTHO05D007713 8.4e-44 181.0 191 56.5
MSTRG.19274 Avicennia marina HOM05D007282 ORTHO05D009214 1.4e-43 180.3 166 57.8
Lsat_1_v5_gn_5_165601 Lactuca sativa HOM05D007282 ORTHO05D009214 1.9e-43 179.9 149 61.1
Gohir.A09G141100 Gossypium hirsutum HOM05D007282 ORTHO05D009214 4.2e-43 178.7 170 59.4
Nn6g34828 Nelumbo nucifera HOM05D007282 ORTHO05D009214 4.2e-43 178.7 189 56.6
ECA248G2482 Erigeron canadensis HOM05D005132 ORTHO05D005823 7.1e-43 177.9 124 66.9
ClCG04G010160 Citrullus lanatus HOM05D007282 ORTHO05D009214 1.2e-42 177.2 168 59.5
Oeu025665.1 Olea europaea HOM05D007282 ORTHO05D009214 1.6e-42 176.8 169 57.4
Sc02g0000410 Simmondsia chinensis HOM05D007282 ORTHO05D009214 1.6e-42 176.8 191 54.5
Thecc.05G094100 Theobroma cacao HOM05D007282 ORTHO05D009214 1.6e-42 176.8 190 53.2
MELO3C024557.2 Cucumis melo HOM05D007282 ORTHO05D009214 2.7e-42 176.0 187 55.6
CARHR130380 Cardamine hirsuta HOM05D007282 ORTHO05D009214 3.5e-42 175.6 130 70.0
Lj2A142T14 Lonicera japonica HOM05D007282 ORTHO05D009214 3.5e-42 175.6 146 63.0
A04p27670 Brassica napus HOM05D000972 ORTHO05D009214 4.6e-42 175.3 118 75.4
BraA04t18262Z Brassica rapa HOM05D000972 ORTHO05D001783 4.6e-42 175.3 118 75.4
Glyma.10G075000 Glycine max HOM05D007282 ORTHO05D009214 4.6e-42 175.3 187 55.1
Thhalv10017280m.g Eutrema salsugineum HOM05D007282 ORTHO05D009214 1.0e-41 174.1 133 68.4
AT2G36145 Arabidopsis thaliana HOM05D007282 ORTHO05D009214 1.3e-41 173.7 129 69.8
CiPaw.09G016500 Carya illinoinensis HOM05D007282 ORTHO05D009214 1.7e-41 173.3 124 67.7
CsaV3_6G040780 Cucumis sativus L. HOM05D007282 ORTHO05D009214 1.7e-41 173.3 187 55.6
Sabra06G0161800 Salix brachista HOM05D007282 ORTHO05D009214 3.0e-41 172.6 192 54.2
Sp4g18380 Schrenkiella parvula HOM05D007282 ORTHO05D009214 3.0e-41 172.6 118 73.7
PGSC0003DMG400008863 Solanum tuberosum HOM05D007282 ORTHO05D009214 3.0e-41 172.6 184 52.7
BcaC02g07630 Brassica carinata HOM05D007282 ORTHO05D009214 5.1e-41 171.8 162 59.9
BolC4t27996H Brassica oleracea HOM05D007282 ORTHO05D009214 5.1e-41 171.8 162 59.9
Cpa.g.sc104.101 Carica papaya HOM05D007282 ORTHO05D009214 5.1e-41 171.8 144 61.1
SGA_v2.0_scaffold31G12895 Striga asiatica HOM05D007282 ORTHO05D009214 6.6e-41 171.4 164 56.1
TWI53G0193 Tripterygium wilfordii HOM05D007282 ORTHO05D009214 6.6e-41 171.4 187 53.5
HPP92_001104 Vanilla planifolia HOM05D007282 ORTHO05D009214 8.7e-41 171.0 114 73.7
QL07p038317 Quercus lobata HOM05D007282 ORTHO05D009214 1.1e-40 170.6 174 53.4
Zm00001eb366810 Zea mays HOM05D007282 ORTHO05D009214 1.1e-40 170.6 124 66.1
HanXRQChr13g0390101 Helianthus annuus HOM05D007282 ORTHO05D009214 1.5e-40 170.2 186 48.9
Solyc09g010120.2 Solanum lycopersicum HOM05D007282 ORTHO05D009214 1.5e-40 170.2 185 50.8
BcaB06g28919 Brassica carinata HOM05D000972 ORTHO05D001783 1.9e-40 169.9 118 72.0
CANSAT64G2352 Cannabis sativa HOM05D007282 ORTHO05D009214 1.9e-40 169.9 158 60.1
Sopen09g004860 Solanum pennellii HOM05D007282 ORTHO05D009214 1.9e-40 169.9 187 52.4
Os01g0862200 Oryza sativa ssp. japonica HOM05D007282 ORTHO05D009214 2.5e-40 169.5 115 70.4
Haze_19645 Corylus avellana HOM05D007282 ORTHO05D009214 3.3e-40 169.1 152 61.2
Lalb_Chr06g0172471 Lupinus albus HOM05D007282 ORTHO05D009214 3.3e-40 169.1 125 63.2
Carub.0004s1791 Capsella rubella HOM05D007282 ORTHO05D009214 7.3e-40 167.9 140 66.4
Atru.chr8.1455 Acer truncatum HOM05D007282 ORTHO05D009214 9.6e-40 167.5 129 62.8
AL4G32230 Arabidopsis lyrata HOM05D007282 ORTHO05D009214 9.6e-40 167.5 152 60.5
Sed0020389 Sechium edule HOM05D007282 ORTHO05D009214 9.6e-40 167.5 192 53.6
Aa31LG5G21280 Aethionema arabicum HOM05D007282 ORTHO05D009214 1.2e-39 167.2 133 66.2
Cc00_g15490 Coffea canephora HOM05D007282 ORTHO05D009214 1.6e-39 166.8 105 76.2
Potri.006G210000 Populus trichocarpa HOM05D007282 ORTHO05D009214 1.6e-39 166.8 192 52.6
RcHm_v2.0_Chr3g0474621 Rosa chinensis HOM05D007282 ORTHO05D009214 2.1e-39 166.4 174 52.9
Ca_30898_v3 Cicer arietinum L. HOM05D007282 ORTHO05D009214 2.8e-39 166.0 119 68.1
Lj5g0026678 Lotus japonicus HOM05D007282 ORTHO05D009214 6.2e-39 164.9 170 54.7
Aqoxy4G02730 Aquilegia oxysepala HOM05D007282 ORTHO05D009214 1.4e-38 163.7 186 48.4
FvH4_6g19360 Fragaria vesca HOM05D007282 ORTHO05D009214 4.0e-38 162.2 171 52.6
GSVIVG01033882001 Vitis vinifera HOM05D007282 ORTHO05D009214 4.0e-38 162.2 105 74.3
ATR0820G206 Amborella trichopoda HOM05D007282 ORTHO05D009214 5.3e-38 161.8 115 69.6
Phvul.007G163900 Phaseolus vulgaris HOM05D007282 ORTHO05D009214 6.9e-38 161.4 113 68.1
C04p65190 Brassica napus HOM05D007282 ORTHO05D009214 9.0e-38 161.0 127 67.7
FAN02G3890 Fragaria x ananassa HOM05D007282 ORTHO05D009214 9.0e-38 161.0 172 52.3
Psat6g084240 Pisum sativum HOM05D007282 ORTHO05D009214 1.2e-37 160.6 148 56.8
THA.LOC104799754 Tarenaya hassleriana HOM05D007282 ORTHO05D009214 1.5e-37 160.2 187 54.0
Prupe.7G102300 Prunus persica HOM05D007282 ORTHO05D009214 4.4e-37 158.7 182 52.2
PSO339G4969 Papaver somniferum HOM05D007282 ORTHO05D009214 1.3e-36 157.1 171 55.0
PSO384G4616 Papaver somniferum HOM05D007282 ORTHO05D009214 4.9e-36 155.2 175 55.4
TPR.G14774 Trifolium pratense HOM05D007282 ORTHO05D009214 4.9e-36 155.2 114 64.9
CDE08G0791 Ceratophyllum demersum HOM05D007282 ORTHO05D009214 3.5e-34 149.1 113 63.7
Hund03936 Selenicereus undatus HOM05D007282 ORTHO05D009214 2.3e-33 146.4 171 53.2
AUR62036998 Chenopodium quinoa HOM05D007282 ORTHO05D009214 5.1e-33 145.2 185 50.8
Medtr1g059660 Medicago truncatula HOM05D007282 ORTHO05D009214 8.7e-33 144.4 163 50.3
CDE08G0228 Ceratophyllum demersum HOM05D007282 ORTHO05D009214 3.6e-31 139.0 112 62.5
DCAR_031561 Daucus carota HOM05D007282 ORTHO05D009214 4.8e-31 138.7 71 94.4
Hma1.2p1_0769F.1_g215760 Hydrangea macrophylla HOM05D007282 ORTHO05D009214 1.2e-29 134.0 122 57.4
CDE02G2307 Ceratophyllum demersum HOM05D007282 ORTHO05D009214 2.6e-29 132.9 126 55.6
AUR62006220 Chenopodium quinoa HOM05D007282 ORTHO05D009214 5.8e-29 131.7 183 48.6
COL.COLO4_03547 Corchorus olitorius HOM05D007282 ORTHO05D009214 2.9e-28 129.4 140 51.4
Nitab4.5_0001875g0020 Nicotiana tabacum HOM05D007282 ORTHO05D009214 1.1e-27 127.5 188 46.3
Mapoly0153s0036 Marchantia polymorpha HOM05D007282 ORTHO05D009214 9.3e-27 124.4 140 50.0
Pp3c14_14160 Physcomitrium patens HOM05D007282 ORTHO05D009214 3.5e-26 122.5 147 46.9
AagrBONN_evm.TU.Sc2ySwM_344.5307 Anthoceros agrestis HOM05D007282 ORTHO05D009214 4.6e-26 122.1 121 51.2
EL10Ac7g16881 Beta vulgaris HOM05D007282 ORTHO05D009214 4.6e-26 122.1 193 44.0
arahy.Tifrunner.gnm1.ann1.LMCN1R Arachis hypogaea HOM05D007282 ORTHO05D009214 7.9e-26 121.3 193 43.5
arahy.Tifrunner.gnm1.ann1.TUP4W7 Arachis hypogaea HOM05D007282 ORTHO05D009214 7.9e-26 121.3 193 43.5
Aqoxy1G00013 Aquilegia oxysepala HOM05D007282 ORTHO05D009214 4.8e-23 112.1 91 61.5
Aqoxy2G01255 Aquilegia oxysepala HOM05D007282 ORTHO05D009214 1.1e-22 110.9 91 61.5
SMO353G0249 Selaginella moellendorffii HOM05D007282 ORTHO05D009214 1.1e-22 110.9 122 46.7
MD12G1029300 Malus domestica HOM05D007282 ORTHO05D009214 4.5e-21 105.5 73 65.8
MD14G1029600 Malus domestica HOM05D007282 ORTHO05D009214 9.9e-21 104.4 73 65.8
Ca_22305_v3 Cicer arietinum L. HOM05D007282 ORTHO05D009214 8.7e-17 91.3 77 58.4
Actinidia05405 Actinidia chinensis HOM05D005132 ORTHO05D005823 4.3e-08 62.4 44 63.6


User provided reference genes

Program Settings