Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013397 Daucus carota HOM05D007825 ORTHO05D009693 3.4e-37 157.9 85 100.0
DCAR_013400 Daucus carota HOM05D007825 ORTHO05D009693 5.1e-25 117.5 87 74.7
Manes.09G054200 Manihot esculenta HOM05D007825 ORTHO05D009693 6.9e-14 80.5 86 52.3
TWI74G1133 Tripterygium wilfordii HOM05D007825 ORTHO05D009693 1.2e-13 79.7 89 53.9
AUR62006195 Chenopodium quinoa HOM05D007825 ORTHO05D009693 2.0e-13 79.0 83 53.0
Sopen09g004680 Solanum pennellii HOM05D007825 ORTHO05D009693 3.4e-13 78.2 88 51.1
Glyma.19G194978 Glycine max HOM05D007825 ORTHO05D009693 5.9e-13 77.4 88 52.3
Ah.15g090680 Amaranthus hybridus HOM05D007825 ORTHO05D009693 1.0e-12 76.6 79 49.4
AUR62037026 Chenopodium quinoa HOM05D007825 ORTHO05D009693 1.0e-12 76.6 83 51.8
Solyc09g009930.2 Solanum lycopersicum HOM05D007825 ORTHO05D009693 1.0e-12 76.6 88 51.1
Dinv31697 Davidia involucrata HOM05D007825 ORTHO05D009693 1.3e-12 76.3 87 48.3
CARHR162440 Cardamine hirsuta HOM05D007825 ORTHO05D009693 1.7e-12 75.9 87 49.4
Cc06_g05960 Coffea canephora HOM05D007825 ORTHO05D009693 2.2e-12 75.5 87 49.4
Lalb_Chr10g0096381 Lupinus albus HOM05D007825 ORTHO05D009693 2.2e-12 75.5 83 50.6
Carub.0005s1904 Capsella rubella HOM05D007825 ORTHO05D009693 3.8e-12 74.7 87 50.6
Ca_00897_v3 Cicer arietinum L. HOM05D007825 ORTHO05D009693 3.8e-12 74.7 87 46.0
Glyma.13G154500 Glycine max HOM05D007825 ORTHO05D009693 3.8e-12 74.7 84 50.0
Lj5g0027478 Lotus japonicus HOM05D007825 ORTHO05D009693 3.8e-12 74.7 87 47.1
Rhsim03G0074400 Rhododendron simsii HOM05D001257 ORTHO05D007181 5.0e-12 74.3 87 46.0
PGSC0003DMG400008872 Solanum tuberosum HOM05D007825 ORTHO05D009693 5.0e-12 74.3 88 48.9
AL5G33400 Arabidopsis lyrata HOM05D007825 ORTHO05D009693 8.5e-12 73.6 87 49.4
AT3G52620 Arabidopsis thaliana HOM05D007825 ORTHO05D009693 1.1e-11 73.2 87 49.4
Medtr1g059820 Medicago truncatula HOM05D007825 ORTHO05D009693 1.1e-11 73.2 87 43.7
Lalb_Chr02g0154901 Lupinus albus HOM05D007825 ORTHO05D009693 1.4e-11 72.8 84 46.4
Lalb_Chr17g0338831 Lupinus albus HOM05D007825 ORTHO05D009693 1.4e-11 72.8 83 48.2
Cpa.g.sc5.6 Carica papaya HOM05D007825 ORTHO05D009693 1.9e-11 72.4 88 46.6
EL10Ac7g16903 Beta vulgaris HOM05D007825 ORTHO05D009693 4.2e-11 71.2 85 48.2
CsaV3_3G037370 Cucumis sativus L. HOM05D007825 ORTHO05D009693 4.2e-11 71.2 89 50.6
BcaB01g00352 Brassica carinata HOM05D007825 ORTHO05D009693 5.5e-11 70.9 85 48.2
BcaC07g39631 Brassica carinata HOM05D007825 ORTHO05D009693 5.5e-11 70.9 85 48.2
A09p45710 Brassica napus HOM05D007825 ORTHO05D009693 5.5e-11 70.9 85 48.2
C08p27910 Brassica napus HOM05D007825 ORTHO05D009693 5.5e-11 70.9 85 48.2
BolC8t50406H Brassica oleracea HOM05D007825 ORTHO05D009693 5.5e-11 70.9 85 48.2
BraA09t40032Z Brassica rapa HOM05D007825 ORTHO05D009693 5.5e-11 70.9 85 48.2
COL.COLO4_29710 Corchorus olitorius HOM05D007825 ORTHO05D009693 5.5e-11 70.9 88 45.5
Thecc.05G090800 Theobroma cacao HOM05D007825 ORTHO05D009693 5.5e-11 70.9 84 46.4
Duzib093G1765 Durio zibethinus HOM05D007825 ORTHO05D009693 7.2e-11 70.5 84 51.2
Phvul.001G191100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 7.2e-11 70.5 87 47.1
QL07p038635 Quercus lobata HOM05D007825 ORTHO05D009693 7.2e-11 70.5 87 48.3
Thhalv10010896m.g Eutrema salsugineum HOM05D007825 ORTHO05D009693 9.4e-11 70.1 79 49.4
Sc07g0005630 Simmondsia chinensis HOM05D007825 ORTHO05D009693 9.4e-11 70.1 83 45.8
Actinidia07924 Actinidia chinensis HOM05D001354 ORTHO05D007486 1.6e-10 69.3 89 44.9
Sp5g09670 Schrenkiella parvula HOM05D007825 ORTHO05D009693 1.6e-10 69.3 78 48.7
arahy.Tifrunner.gnm1.ann1.KBFV5H Arachis hypogaea HOM05D001354 ORTHO05D007486 2.1e-10 68.9 86 44.2
TPR.G9902 Trifolium pratense HOM05D007825 ORTHO05D009693 2.1e-10 68.9 85 42.4
Sabra16G0083000 Salix brachista HOM05D007825 ORTHO05D009693 3.6e-10 68.2 87 46.0
MELO3C009481.2 Cucumis melo HOM05D007825 ORTHO05D009693 4.6e-10 67.8 89 48.3
Eucgr.A02998 Eucalyptus grandis HOM05D007825 ORTHO05D009693 4.6e-10 67.8 86 43.0
THA.LOC104799760 Tarenaya hassleriana HOM05D007825 ORTHO05D009693 4.6e-10 67.8 82 46.3
Atru.chr2.2492 Acer truncatum HOM05D007825 ORTHO05D009693 6.1e-10 67.4 88 44.3
FAN05G0267 Fragaria x ananassa HOM05D007825 ORTHO05D009693 6.1e-10 67.4 89 43.8
arahy.Tifrunner.gnm1.ann1.S2NT6M Arachis hypogaea HOM05D007825 ORTHO05D009693 7.9e-10 67.0 83 44.6
Glyma.10G074000 Glycine max HOM05D007825 ORTHO05D009693 7.9e-10 67.0 84 44.0
Sabra06G0163100 Salix brachista HOM05D001354 ORTHO05D007486 7.9e-10 67.0 82 45.1
Migut.J01022 Erythranthe guttata HOM05D007825 ORTHO05D009693 1.0e-09 66.6 100 40.0
Psat3g207080 Pisum sativum HOM05D007825 ORTHO05D009693 1.0e-09 66.6 87 42.5
Potri.006G211600 Populus trichocarpa HOM05D007825 ORTHO05D009693 1.0e-09 66.6 82 46.3
Prupe.7G104600 Prunus persica HOM05D007825 ORTHO05D009693 1.0e-09 66.6 87 44.8
GSVIVG01033861001 Vitis vinifera HOM05D007825 ORTHO05D009693 1.0e-09 66.6 85 41.2
ClCG10G018870 Citrullus lanatus HOM05D007825 ORTHO05D009693 1.4e-09 66.2 88 46.6
FAN14G3782 Fragaria x ananassa HOM05D007825 ORTHO05D009693 1.4e-09 66.2 89 42.7
SalBow3G1626 Salvia bowleyana HOM05D007825 ORTHO05D009693 1.4e-09 66.2 105 38.1
BcaB02g07824 Brassica carinata HOM05D007825 ORTHO05D009693 1.8e-09 65.9 85 44.7
FAN02G3309 Fragaria x ananassa HOM05D007825 ORTHO05D009693 1.8e-09 65.9 89 42.7
FAN14G2292 Fragaria x ananassa HOM05D007825 ORTHO05D009693 1.8e-09 65.9 89 42.7
Potri.016G078700 Populus trichocarpa HOM05D007825 ORTHO05D009693 1.8e-09 65.9 86 44.2
arahy.Tifrunner.gnm1.ann1.24RTVW Arachis hypogaea HOM05D007825 ORTHO05D009693 2.3e-09 65.5 85 43.5
arahy.Tifrunner.gnm1.ann1.L43FYW Arachis hypogaea HOM05D007825 ORTHO05D009693 2.3e-09 65.5 85 43.5
Sed0008191 Sechium edule HOM05D007825 ORTHO05D009693 5.1e-09 64.3 87 48.3
Haze_12107 Corylus avellana HOM05D001354 ORTHO05D007486 6.7e-09 63.9 88 42.0
Glyma.09G026600 Glycine max HOM05D007825 ORTHO05D009693 6.7e-09 63.9 84 45.2
MD12G1027000 Malus domestica HOM05D007825 ORTHO05D009693 6.7e-09 63.9 85 41.2
Phvul.003G041100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 6.7e-09 63.9 87 41.4
Peaxi162Scf00404g00115 Petunia axillaris HOM05D007825 ORTHO05D009693 8.8e-09 63.5 90 41.1
CiPaw.09G015200 Carya illinoinensis HOM05D007825 ORTHO05D009693 1.1e-08 63.2 86 39.5
Aa31LG10G7690 Aethionema arabicum HOM05D007825 ORTHO05D009693 3.3e-08 61.6 84 41.7
Cfa009073 Carpinus fangiana HOM05D007825 ORTHO05D009693 3.3e-08 61.6 90 40.0
unitig_578.g16364 Utricularia gibba HOM05D001354 ORTHO05D007486 9.7e-08 60.1 95 37.9
TAR633G2289 Trochodendron aralioides HOM05D007825 ORTHO05D009693 1.1e-06 56.6 92 37.0
MD14G1027100 Malus domestica HOM05D007825 ORTHO05D009693 1.8e-06 55.8 93 36.6
RcHm_v2.0_Chr3g0474201 Rosa chinensis HOM05D007825 ORTHO05D009693 6.9e-06 53.9 91 35.2


User provided reference genes

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