Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013319 Daucus carota HOM05D007704 ORTHO05D009758 7.2e-119 430.6 224 100.0
Ciclev10032332m.g Citrus clementina HOM05D007704 ORTHO05D009758 2.3e-24 116.7 212 39.2
Potri.002G058800 Populus trichocarpa HOM05D007704 ORTHO05D009758 7.4e-23 111.7 219 37.4
Atru.chr6.2068_Atru.chr6.2069 Acer truncatum HOM05D007704 ORTHO05D009758 3.7e-22 109.4 215 37.2
TWI59G0036 Tripterygium wilfordii HOM05D007704 ORTHO05D009758 1.1e-21 107.8 215 38.1
COL.COLO4_08458 Corchorus olitorius HOM05D007704 ORTHO05D009758 2.4e-21 106.7 212 37.3
QL08p044652 Quercus lobata HOM05D007704 ORTHO05D009758 2.4e-21 106.7 212 35.8
Glyma.08G308800 Glycine max HOM05D007704 ORTHO05D009758 9.0e-21 104.8 136 44.9
arahy.Tifrunner.gnm1.ann1.Q0GQHR Arachis hypogaea HOM05D007704 ORTHO05D009758 1.5e-20 104.0 134 47.8
Psat0s3897g0040 Pisum sativum HOM05D007704 ORTHO05D009758 1.5e-20 104.0 134 45.5
Nn3g20648 Nelumbo nucifera HOM05D007704 ORTHO05D009758 4.5e-20 102.4 221 36.7
Ca_14608_v3 Cicer arietinum L. HOM05D007704 ORTHO05D009758 1.3e-19 100.9 129 48.8
Thecc.01G163800 Theobroma cacao HOM05D007704 ORTHO05D009758 1.3e-19 100.9 213 37.1
arahy.Tifrunner.gnm1.ann1.I86J5P Arachis hypogaea HOM05D007704 ORTHO05D009758 1.7e-19 100.5 134 45.5
VMungo0540G0710 Vigna mungo HOM05D007704 ORTHO05D009758 6.5e-19 98.6 136 45.6
Sabra02G0047700 Salix brachista HOM05D007704 ORTHO05D009758 8.5e-19 98.2 135 44.4
Phvul.006G032200 Phaseolus vulgaris HOM05D007704 ORTHO05D009758 1.1e-18 97.8 137 43.8
Haze_13518 Corylus avellana HOM05D007704 ORTHO05D009758 1.4e-18 97.4 139 43.9
Medtr3g047590 Medicago truncatula HOM05D007704 ORTHO05D009758 1.4e-18 97.4 136 41.2
GSVIVG01020855001 Vitis vinifera HOM05D007704 ORTHO05D009758 1.4e-18 97.4 210 35.2
Eucgr.A01992 Eucalyptus grandis HOM05D007704 ORTHO05D009758 1.2e-17 94.4 186 36.0
PGR042G3448 Punica granatum HOM05D007704 ORTHO05D009758 1.2e-17 94.4 149 40.9
MSTRG.15037 Avicennia marina HOM05D007704 ORTHO05D009758 1.6e-17 94.0 230 32.2
TPR.G16762 Trifolium pratense HOM05D007704 ORTHO05D009758 2.7e-17 93.2 135 44.4
TAR626G0172 Trochodendron aralioides HOM05D007704 ORTHO05D009758 2.7e-17 93.2 227 33.9
Glyma.18G107800 Glycine max HOM05D007704 ORTHO05D009758 6.1e-17 92.0 136 42.6
MD17G1137700 Malus domestica HOM05D007704 ORTHO05D009758 1.0e-16 91.3 134 44.0
Cpa.g.sc50.98 Carica papaya HOM05D007704 ORTHO05D009758 1.3e-16 90.9 189 33.9
FvH4_6g38482 Fragaria vesca HOM05D007704 ORTHO05D009758 2.3e-16 90.1 135 41.5
FAN14G3331 Fragaria x ananassa HOM05D007704 ORTHO05D009758 2.3e-16 90.1 135 41.5
FAN09G1582 Fragaria x ananassa HOM05D007704 ORTHO05D009758 3.9e-16 89.4 135 40.7
RcHm_v2.0_Chr2g0151721 Rosa chinensis HOM05D007704 ORTHO05D009758 3.9e-16 89.4 138 42.0
Sed0015338 Sechium edule HOM05D007704 ORTHO05D009758 5.1e-16 89.0 157 35.7
Gohir.A05G379900 Gossypium hirsutum HOM05D007704 ORTHO05D009758 6.7e-16 88.6 217 33.6
Gorai.012G040100 Gossypium raimondii HOM05D007704 ORTHO05D009758 6.7e-16 88.6 222 33.3
Prupe.3G174900 Prunus persica HOM05D007704 ORTHO05D009758 1.5e-15 87.4 128 43.0
FvH4_6g38470 Fragaria vesca HOM05D007704 ORTHO05D009758 1.9e-15 87.0 139 43.2
Gohir.D04G035566 Gossypium hirsutum HOM05D007704 ORTHO05D009758 2.5e-15 86.7 222 33.3
BcaC07g42062 Brassica carinata HOM05D007704 ORTHO05D009758 3.3e-15 86.3 140 41.4
C08p51180 Brassica napus HOM05D007704 ORTHO05D009758 3.3e-15 86.3 139 39.6
BolC8t52645H Brassica oleracea HOM05D000230 ORTHO05D000176 3.3e-15 86.3 139 39.6
SGA_v2.0_scaffold70G23621 Striga asiatica HOM05D007704 ORTHO05D009758 4.3e-15 85.9 222 30.6
Migut.M00569 Erythranthe guttata HOM05D007704 ORTHO05D009758 5.7e-15 85.5 230 35.2
FAN02G0747 Fragaria x ananassa HOM05D007704 ORTHO05D009758 5.7e-15 85.5 138 43.5
A09p66950 Brassica napus HOM05D000230 ORTHO05D000176 7.4e-15 85.1 140 40.0
BraA09t42030Z Brassica rapa HOM05D000230 ORTHO05D000176 7.4e-15 85.1 140 40.0
THA.LOC104800828 Tarenaya hassleriana HOM05D007704 ORTHO05D009758 7.4e-15 85.1 143 39.9
AT1G06500 Arabidopsis thaliana HOM05D007704 ORTHO05D009758 1.3e-14 84.3 139 37.4
Cc05_g09660 Coffea canephora HOM05D007704 ORTHO05D009758 1.3e-14 84.3 235 34.9
MBI07_g07812_MAGBIO Magnolia biondii HOM05D007704 ORTHO05D009758 6.3e-14 82.0 130 41.5
Sp1g05260 Schrenkiella parvula HOM05D007704 ORTHO05D009758 8.2e-14 81.6 140 37.9
Eucgr.A02009 Eucalyptus grandis HOM05D007704 ORTHO05D009758 1.1e-13 81.3 151 38.4
AUR62000092 Chenopodium quinoa HOM05D007704 ORTHO05D009758 2.4e-13 80.1 218 33.5
Aqoxy4G00112 Aquilegia oxysepala HOM05D007704 ORTHO05D009758 3.1e-13 79.7 232 30.2
Sopen12g006550 Solanum pennellii HOM05D007704 ORTHO05D009758 3.1e-13 79.7 214 30.4
AL1G16520 Arabidopsis lyrata HOM05D007704 ORTHO05D009758 6.9e-13 78.6 142 36.6
Carub.0001s0586 Capsella rubella HOM05D007704 ORTHO05D009758 1.2e-12 77.8 140 37.9
Solyc12g011190.2 Solanum lycopersicum HOM05D007704 ORTHO05D009758 2.0e-12 77.0 214 30.4
Thhalv10009066m.g Eutrema salsugineum HOM05D007704 ORTHO05D009758 4.5e-12 75.9 140 37.1
Peaxi162Scf00789g00013 Petunia axillaris HOM05D007704 ORTHO05D009758 5.9e-12 75.5 202 31.2
EL10Ac4g10303 Beta vulgaris HOM05D007704 ORTHO05D009758 7.7e-12 75.1 226 33.6
Lj6g0009873 Lotus japonicus HOM05D007704 ORTHO05D009758 1.0e-11 74.7 176 35.2
PGSC0003DMG400007847 Solanum tuberosum HOM05D007704 ORTHO05D009758 1.0e-11 74.7 214 29.0
Eucgr.A01996 Eucalyptus grandis HOM05D007704 ORTHO05D009758 1.3e-11 74.3 124 40.3
ATR0757G094 Amborella trichopoda HOM05D007704 ORTHO05D009758 2.9e-11 73.2 241 30.7
CARHR006110 Cardamine hirsuta HOM05D007704 ORTHO05D009758 3.8e-11 72.8 143 32.2
CDE09G0200 Ceratophyllum demersum HOM05D007704 ORTHO05D009758 4.2e-10 69.3 220 27.3
Hund07540 Selenicereus undatus HOM05D008449 ORTHO05D010615 4.2e-10 69.3 250 31.6
FAN05G1345 Fragaria x ananassa HOM05D007704 ORTHO05D009758 5.5e-10 68.9 119 42.0
CAN.G164.20 Capsicum annuum HOM05D007704 ORTHO05D009758 9.4e-10 68.2 108 38.9
unitig_85.g27396 Utricularia gibba HOM05D007704 ORTHO05D009758 2.7e-09 66.6 199 29.1
Ah.06g193590 Amaranthus hybridus HOM05D003002 ORTHO05D003583 4.6e-09 65.9 208 29.8
SEGI_16323 Sequoiadendron giganteum HOM05D007704 ORTHO05D009758 4.6e-09 65.9 176 31.2
Sc16g0011630 Simmondsia chinensis HOM05D007704 ORTHO05D009758 7.9e-09 65.1 218 29.4
AagrBONN_evm.TU.Sc2ySwM_344.3472 Anthoceros agrestis HOM05D007704 ORTHO05D009758 5.1e-08 62.4 233 27.9
Mapoly0023s0099 Marchantia polymorpha HOM05D007704 ORTHO05D009758 5.1e-08 62.4 144 28.5
Nitab4.5_0001232g0110 Nicotiana tabacum HOM05D007704 ORTHO05D009758 8.8e-08 61.6 215 28.4
THA.LOC104827393 Tarenaya hassleriana HOM05D007704 ORTHO05D009758 2.0e-07 60.5 135 35.6
Pp3c17_13710 Physcomitrium patens HOM05D007704 ORTHO05D009758 4.4e-07 59.3 208 28.4
Aa31LG1G7580 Aethionema arabicum HOM05D007704 ORTHO05D009758 1.3e-06 57.8 134 34.3
Os01g0246500 Oryza sativa ssp. japonica HOM05D007704 ORTHO05D009758 4.8e-06 55.8 131 29.8
ClCG09G022520 Citrullus lanatus HOM05D007704 ORTHO05D009758 6.3e-06 55.5 101 35.6


User provided reference genes

Program Settings