Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 0.0e+00 1082.8 569 100.0
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.7e-138 496.5 581 52.7
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.7e-132 477.2 571 52.0
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 2.2e-132 476.9 580 52.1
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 4.9e-132 475.7 579 52.2
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 6.5e-132 475.3 582 50.7
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 1.3e-129 467.6 587 50.4
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 3.0e-129 466.5 610 49.2
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 4.3e-128 462.6 580 49.7
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.4e-126 457.6 578 50.5
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 5.3e-126 455.7 576 49.7
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.5e-125 454.1 630 47.0
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 2.5e-123 446.8 580 49.5
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 2.3e-121 440.3 578 49.5
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.9e-120 437.2 583 49.7
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 5.7e-120 435.6 572 49.5
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 2.8e-119 433.3 578 50.0
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 4.1e-118 429.5 577 49.2
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.0e-117 427.2 578 47.8
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 4.5e-117 426.0 577 49.0
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.2e-116 423.7 576 47.7
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.9e-115 420.6 578 47.1
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.9e-115 420.6 577 47.7
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 3.2e-115 419.9 587 48.4
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.2e-114 417.9 577 47.7
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.2e-114 417.9 577 48.7
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.6e-114 417.5 573 48.9
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.7e-114 416.8 576 48.4
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 3.6e-114 416.4 584 49.0
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 7.9e-114 415.2 598 46.8
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 2.3e-113 413.7 577 47.0
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 2.3e-113 413.7 573 46.6
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 2.6e-112 410.2 573 46.8
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 4.4e-112 409.5 592 47.5
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.8e-111 406.8 578 47.8
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 3.7e-111 406.4 580 46.4
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 8.2e-111 405.2 574 47.9
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.2e-109 401.4 578 47.8
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.0e-108 398.3 581 46.5
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.7e-108 397.5 596 46.5
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 2.2e-108 397.1 582 47.1
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.2e-108 397.1 581 46.3
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 5.0e-108 396.0 579 46.6
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 8.5e-108 395.2 611 45.7
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 3.2e-107 393.3 589 46.0
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 3.2e-107 393.3 574 47.2
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 6.1e-106 389.0 597 43.7
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 5.2e-105 386.0 598 46.3
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 6.7e-105 385.6 589 45.3
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 8.8e-105 385.2 580 45.7
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.1e-104 384.8 590 47.3
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 2.6e-104 383.6 669 41.7
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 3.3e-104 383.3 576 45.0
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.8e-103 380.2 589 45.7
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 2.8e-103 380.2 602 43.4
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 3.7e-103 379.8 513 48.1
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 1.8e-102 377.5 585 45.6
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 5.3e-102 375.9 579 42.8
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 1.2e-101 374.8 586 45.7
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.6e-101 373.6 583 44.3
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 3.2e-99 366.7 583 43.4
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 2.1e-98 364.0 593 45.7
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 4.7e-98 362.8 578 44.5
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 1.8e-97 360.9 581 45.3
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.2e-96 358.2 497 48.3
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 3.3e-96 356.7 584 44.5
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 4.4e-96 356.3 594 43.9
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 5.7e-96 355.9 578 43.8
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 7.5e-96 355.5 536 45.0
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.7e-95 353.2 575 45.0
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 1.1e-94 351.7 582 43.6
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 4.1e-94 349.7 587 42.6
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 7.0e-94 349.0 582 44.0
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.5e-93 346.7 335 55.8
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 5.9e-93 345.9 585 43.8
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 1.0e-92 345.1 571 42.2
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.3e-92 344.7 573 41.4
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 5.0e-92 342.8 573 44.0
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 5.0e-92 342.8 571 41.9
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 8.5e-92 342.0 575 43.1
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 3.0e-89 333.6 577 44.0
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 4.0e-89 333.2 541 44.4
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 2.0e-88 330.9 596 40.8
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 5.7e-88 329.3 574 40.9
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 1.1e-86 325.1 596 42.4
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 7.0e-86 322.4 574 41.1
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 2.9e-84 317.0 572 40.6
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 1.1e-83 315.1 570 39.8
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 1.9e-83 314.3 570 39.8
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.5e-83 313.9 439 45.6
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 4.0e-81 306.6 571 40.1
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 5.2e-81 306.2 472 46.0
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.1e-78 298.5 574 38.9
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 9.2e-78 295.4 502 40.6
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 4.5e-77 293.1 618 38.0
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.3e-75 287.0 545 42.2
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 4.3e-75 286.6 564 39.4
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 9.5e-75 285.4 589 39.6
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 4.7e-74 283.1 316 52.8
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 8.0e-74 282.3 568 39.1
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.0e-72 277.7 288 54.2
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 4.9e-71 273.1 599 38.2
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.7e-69 267.3 526 39.9
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 1.5e-67 261.5 568 37.5
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.6e-66 258.1 590 37.6
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.3e-63 248.4 531 37.5
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.3e-63 248.4 531 37.5
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 1.1e-62 245.4 579 38.7
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.7e-60 238.0 422 44.1
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 1.2e-56 225.3 281 47.7
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 2.0e-48 198.0 517 34.4
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 1.7e-47 194.9 326 42.3
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 1.4e-46 191.8 441 37.4
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.9e-46 191.4 453 38.9
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 1.9e-46 191.4 453 38.4
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 4.4e-40 170.2 601 29.8
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 2.9e-39 167.5 598 29.1
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 2.4e-33 147.9 260 37.7
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.4e-30 137.9 427 33.7
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 4.2e-30 137.1 568 26.8
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 2.5e-27 127.9 172 40.1
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 3.1e-25 120.9 292 36.6
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 5.1e-20 103.6 111 58.6
DCAR_032089 Daucus carota HOM05D002452 ORTHO05D006766 1.9e-19 101.7 58 94.8
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.3e-18 99.0 229 34.5
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.1e-17 94.4 100 57.0
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.4e-14 85.5 132 45.5
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.2e-13 82.4 125 32.0
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 6.0e-13 80.1 209 33.5
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 1.3e-12 79.0 240 34.6
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 3.0e-12 77.8 71 52.1
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 5.7e-11 73.6 194 32.5
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 1.3e-10 72.4 291 29.9
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 1.3e-10 72.4 116 42.2
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 1.1e-09 69.3 99 48.5
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 1.1e-09 69.3 99 48.5
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 1.1e-09 69.3 99 48.5
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 1.1e-09 69.3 99 48.5
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 1.1e-09 69.3 99 48.5
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 1.1e-09 69.3 99 48.5
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 2.0e-08 65.1 195 29.2
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 2.6e-08 64.7 112 41.1
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 3.2e-06 57.8 43 62.8


User provided reference genes

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