Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.1e-191 672.2 328 100.0
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 3.6e-127 458.8 300 71.7
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.2e-125 453.8 304 70.4
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 2.6e-125 452.6 286 73.1
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 4.4e-125 451.8 300 69.7
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.3e-124 450.3 321 67.0
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 2.2e-124 449.5 305 68.9
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 6.4e-124 448.0 290 71.0
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 8.3e-124 447.6 302 69.5
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.1e-123 447.2 290 69.7
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 3.2e-123 445.7 290 70.7
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 4.1e-123 445.3 300 68.7
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 7.0e-123 444.5 290 69.0
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.5e-122 442.2 304 66.8
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 3.5e-122 442.2 290 69.7
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 4.6e-122 441.8 292 69.5
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.0e-121 440.7 322 65.2
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-121 440.3 317 65.0
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.3e-121 440.3 317 65.0
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.7e-121 439.9 286 69.2
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 2.3e-121 439.5 300 67.7
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 3.0e-121 439.1 326 65.0
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 3.0e-121 439.1 326 65.0
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 3.0e-121 439.1 300 67.7
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 3.9e-121 438.7 302 68.2
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 6.6e-121 438.0 300 67.3
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 6.6e-121 438.0 288 69.8
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 8.6e-121 437.6 290 69.3
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 1.5e-120 436.8 288 67.7
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.5e-120 436.8 288 69.4
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 2.5e-120 436.0 302 66.9
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 3.3e-120 435.6 300 67.0
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 4.3e-120 435.3 290 67.2
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.6e-120 434.9 290 67.9
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 7.3e-120 434.5 302 68.9
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 9.5e-120 434.1 288 68.1
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.2e-119 433.7 290 66.9
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.2e-119 433.7 288 68.8
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.6e-119 433.3 290 70.7
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 1.6e-119 433.3 290 66.9
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 2.1e-119 433.0 305 64.9
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.8e-119 432.6 327 62.4
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 2.8e-119 432.6 303 64.7
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.8e-119 432.6 290 67.6
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 3.6e-119 432.2 300 67.0
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 3.6e-119 432.2 290 69.0
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 3.6e-119 432.2 290 66.9
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.1e-119 431.0 317 63.7
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 8.1e-119 431.0 288 68.1
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.1e-118 430.6 305 66.2
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.4e-118 430.3 288 68.4
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.4e-118 430.3 300 66.3
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.8e-118 429.9 319 64.9
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 3.1e-118 429.1 290 68.6
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 5.2e-118 428.3 292 67.8
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 6.8e-118 427.9 282 68.1
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.2e-117 427.2 312 64.7
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.6e-117 426.0 290 67.2
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 4.4e-117 425.2 305 66.6
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.3e-116 423.7 302 66.6
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 2.2e-116 422.9 314 63.7
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.9e-116 422.5 305 64.3
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 4.9e-116 421.8 315 62.2
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.4e-116 421.4 303 65.0
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 6.4e-116 421.4 314 63.7
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.1e-115 420.6 286 66.4
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.1e-115 420.6 314 63.4
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.4e-115 420.2 285 68.1
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.9e-115 419.9 302 64.2
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 1.9e-115 419.9 290 65.9
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.4e-115 419.5 286 65.4
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 3.2e-115 419.1 290 65.9
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 3.5e-114 415.6 302 64.6
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 1.3e-113 413.7 305 63.3
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.7e-113 413.3 290 64.8
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.7e-113 413.3 286 65.4
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.3e-113 412.9 290 65.9
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 5.1e-113 411.8 285 64.6
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.1e-112 410.6 285 68.1
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 1.9e-112 409.8 316 60.8
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.5e-112 409.5 286 64.3
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 2.5e-112 409.5 302 61.3
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.6e-111 406.8 286 64.0
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.0e-110 402.1 286 63.6
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 6.8e-110 401.4 288 62.2
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.5e-109 400.2 302 59.9
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 4.4e-109 398.7 300 60.7
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 7.6e-109 397.9 292 65.8
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.7e-108 396.7 312 60.3
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.7e-108 396.7 312 58.7
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 2.9e-108 396.0 286 62.6
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 3.7e-108 395.6 302 59.3
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 3.7e-108 395.6 302 59.3
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 4.9e-108 395.2 302 58.9
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 4.9e-108 395.2 302 58.9
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 4.9e-108 395.2 300 60.0
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 6.4e-108 394.8 302 59.3
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.1e-107 394.0 336 55.1
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.9e-107 393.3 330 56.4
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.4e-107 392.9 286 60.8
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.1e-106 389.8 315 56.5
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 1.0e-105 387.5 286 61.9
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.7e-105 386.7 286 61.5
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 5.1e-105 385.2 404 50.0
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.9e-104 383.3 286 61.2
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 1.9e-104 383.3 286 61.2
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 4.3e-104 382.1 286 60.8
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 9.6e-104 380.9 309 59.5
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 1.2e-103 380.6 286 60.8
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.4e-102 376.3 315 54.9
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 4.0e-102 375.6 300 58.3
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 7.6e-101 371.3 290 62.4
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 9.9e-101 370.9 259 65.6
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 2.2e-100 369.8 300 60.3
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.1e-99 367.5 274 63.1
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 4.6e-98 362.1 261 64.8
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 4.6e-98 362.1 287 57.5
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 3.0e-97 359.4 302 59.9
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 6.6e-97 358.2 302 59.6
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 1.3e-95 354.0 252 63.5
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.0e-93 346.7 290 55.2
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 4.9e-92 342.0 284 55.6
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.4e-92 341.7 326 53.1
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 5.4e-91 338.6 290 54.5
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 1.2e-90 337.4 274 56.9
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 1.0e-89 334.3 254 61.0
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 9.9e-85 317.8 298 49.3
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 8.4e-84 314.7 215 67.4
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 3.2e-83 312.8 215 67.0
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 4.2e-83 312.4 290 49.7
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 4.6e-82 308.9 214 64.5
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.9e-80 303.5 216 65.3
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.9e-80 303.5 203 67.0
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.8e-78 297.0 202 66.8
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 2.0e-77 293.5 263 56.3
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.7e-76 290.4 283 48.1
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.8e-76 289.3 299 50.8
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 1.6e-74 283.9 297 50.8
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 1.4e-70 270.8 256 53.5
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 6.3e-63 245.4 216 57.9
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 9.4e-59 231.5 205 54.6
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.1e-51 208.0 163 55.2
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.7e-47 193.0 239 43.5
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 9.1e-46 188.3 179 54.7
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.1e-35 154.8 120 58.3
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.9e-35 154.1 135 56.3
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.0e-33 148.3 100 69.0
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.8e-33 145.6 92 71.7
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.7e-32 142.5 92 70.7
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-31 141.4 144 47.2
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-31 141.4 144 47.2
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 4.1e-30 136.3 87 72.4
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 4.1e-30 136.3 87 72.4
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 2.7e-13 80.5 109 46.8
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 4.7e-10 69.7 44 70.5


User provided reference genes

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