Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 4.1e-84 314.7 161 100.0
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 9.3e-60 233.8 206 62.6
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 2.3e-58 229.2 205 61.5
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 3.0e-58 228.8 206 60.7
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 6.6e-58 227.6 205 62.0
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.6e-56 221.9 205 59.0
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 4.8e-56 221.5 205 61.0
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 8.1e-56 220.7 205 59.5
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.1e-55 220.3 205 59.5
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 4.0e-55 218.4 206 59.7
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 4.0e-55 218.4 207 58.9
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 6.9e-55 217.6 205 59.5
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 6.9e-55 217.6 205 59.0
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 9.0e-55 217.2 205 59.5
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.5e-54 216.5 205 56.1
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 1.5e-54 216.5 205 59.0
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.5e-54 216.5 205 59.0
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 2.0e-54 216.1 205 58.5
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 2.0e-54 216.1 205 58.5
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 2.6e-54 215.7 203 61.6
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.6e-54 215.7 205 58.5
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 3.4e-54 215.3 205 59.0
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 4.5e-54 214.9 205 59.0
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 4.5e-54 214.9 206 58.3
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 4.5e-54 214.9 206 58.3
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 7.6e-54 214.2 205 57.6
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 7.6e-54 214.2 203 55.2
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 9.9e-54 213.8 203 55.2
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 9.9e-54 213.8 205 57.6
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.3e-53 213.4 203 58.1
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.3e-53 213.4 203 55.7
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.3e-53 213.4 203 55.7
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.7e-53 213.0 205 58.5
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.7e-53 213.0 205 56.6
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 2.9e-53 212.2 203 54.7
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 3.8e-53 211.8 206 57.8
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 4.9e-53 211.5 203 55.7
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 4.9e-53 211.5 205 56.6
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 4.9e-53 211.5 203 56.7
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.4e-53 211.1 205 58.5
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 6.4e-53 211.1 206 57.3
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 6.4e-53 211.1 206 57.3
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 8.4e-53 210.7 204 55.9
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 1.1e-52 210.3 207 56.0
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.9e-52 209.5 203 54.7
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.9e-52 209.5 203 54.2
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 3.2e-52 208.8 203 54.7
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 3.2e-52 208.8 203 54.7
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.2e-52 208.8 203 54.2
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 3.2e-52 208.8 203 54.7
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 3.2e-52 208.8 203 54.7
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 4.2e-52 208.4 203 54.7
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 4.2e-52 208.4 203 54.7
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 4.2e-52 208.4 203 54.7
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 5.4e-52 208.0 203 55.2
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 5.4e-52 208.0 203 54.7
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 9.3e-52 207.2 205 58.0
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 1.2e-51 206.8 202 55.0
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 1.2e-51 206.8 226 53.1
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.2e-51 206.8 205 56.6
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 1.6e-51 206.5 203 54.2
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 2.1e-51 206.1 205 59.0
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 2.1e-51 206.1 203 54.2
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 2.7e-51 205.7 203 55.2
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 4.6e-51 204.9 207 57.0
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 4.6e-51 204.9 204 54.4
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 6.0e-51 204.5 205 56.6
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 7.9e-51 204.1 185 58.9
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.3e-50 203.4 213 51.2
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.3e-50 203.4 205 54.6
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 1.8e-50 203.0 205 55.1
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.8e-50 203.0 204 55.4
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 2.3e-50 202.6 204 54.9
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 3.9e-50 201.8 195 57.4
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 5.1e-50 201.4 199 57.8
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 6.7e-50 201.1 205 53.2
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 6.7e-50 201.1 208 56.2
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.5e-49 199.9 200 55.0
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.5e-49 199.9 205 52.7
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 1.5e-49 199.9 204 54.9
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 1.5e-49 199.9 202 53.0
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.9e-49 199.5 205 52.7
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.5e-49 199.1 196 53.6
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 4.3e-49 198.4 202 54.5
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 5.6e-49 198.0 205 56.6
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 5.6e-49 198.0 205 55.1
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 9.6e-49 197.2 205 53.2
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.3e-48 196.8 203 52.7
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.3e-48 196.8 203 52.7
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.3e-48 196.8 203 52.7
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.6e-48 196.4 203 52.7
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.6e-48 196.4 200 54.5
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.6e-48 196.4 202 53.0
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 2.8e-48 195.7 205 52.7
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 2.8e-48 195.7 200 53.5
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 3.7e-48 195.3 206 51.5
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 3.7e-48 195.3 204 53.9
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 4.8e-48 194.9 202 53.5
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 4.8e-48 194.9 193 54.9
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 3.1e-47 192.2 206 55.3
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 4.0e-47 191.8 202 52.0
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 5.3e-47 191.4 207 54.6
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 5.3e-47 191.4 206 51.0
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 6.9e-47 191.0 200 54.0
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.2e-46 190.3 202 52.0
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 1.5e-46 189.9 205 51.2
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 9.9e-46 187.2 209 53.6
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 2.2e-45 186.0 205 54.6
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 1.1e-44 183.7 203 51.2
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 1.4e-44 183.3 203 52.7
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.4e-44 182.6 205 54.1
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 2.1e-43 179.5 257 44.4
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.7e-43 179.1 203 52.2
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 7.9e-43 177.6 204 47.1
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.0e-42 177.2 203 51.2
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.0e-42 177.2 204 50.5
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 1.8e-42 176.4 206 49.0
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 3.3e-41 172.2 207 47.8
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.0e-39 165.2 149 62.4
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 4.5e-38 161.8 194 49.0
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 5.8e-38 161.4 211 46.0
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 2.5e-36 156.0 214 43.0
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 1.0e-34 150.6 211 42.7
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.3e-34 150.2 203 43.3
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.4e-28 130.2 145 55.2
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 5.5e-28 128.3 148 52.7
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 9.3e-28 127.5 206 37.9
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.8e-26 123.2 140 52.9
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.5e-25 120.2 142 53.5
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 4.8e-24 115.2 146 48.6
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 1.5e-22 110.2 137 47.4
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 6.5e-21 104.8 149 47.7
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.5e-20 101.7 74 67.6
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.8e-18 96.7 66 68.2
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.8e-16 89.4 67 67.2
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 2.4e-15 86.3 63 65.1
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 4.5e-14 82.0 201 29.4
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 2.7e-11 72.8 202 29.2
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.7e-11 72.0 50 66.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.7e-11 72.0 50 66.0
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 2.3e-10 69.7 78 47.4
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 8.8e-10 67.8 197 29.4
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.5e-09 67.0 69 52.2
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 8.2e-08 61.2 65 56.9
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 4.1e-07 58.9 81 39.5
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 2.0e-06 56.6 36 66.7
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 2.0e-06 56.6 36 72.2


User provided reference genes

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