Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013239 Daucus carota HOM05D007390 ORTHO05D009114 1.9e-80 304.7 154 100.0
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 1.7e-36 158.7 144 57.6
TWI39G0225 Tripterygium wilfordii HOM05D007390 ORTHO05D009114 4.6e-34 150.6 146 54.8
MELO3C009949.2 Cucumis melo HOM05D007390 ORTHO05D009114 3.1e-30 137.9 143 51.0
CsaV3_3G042310 Cucumis sativus L. HOM05D007390 ORTHO05D009114 6.9e-30 136.7 143 50.3
ClCG09G021340 Citrullus lanatus HOM05D007390 ORTHO05D009114 1.6e-26 125.6 143 46.9
Atru.chr2.3702 Acer truncatum HOM05D007390 ORTHO05D009114 6.7e-17 93.6 147 42.2
Manes.15G058900 Manihot esculenta HOM05D007390 ORTHO05D009114 1.3e-15 89.4 144 37.5
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 2.0e-13 82.0 143 36.4
Actinidia35406 Actinidia chinensis HOM05D007390 ORTHO05D009114 5.8e-13 80.5 144 31.9
BcaC04g20197 Brassica carinata HOM05D007390 ORTHO05D009114 1.7e-12 79.0 139 32.4
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 2.7e-10 71.6 144 31.2
Potri.001G368700 Populus trichocarpa HOM05D007390 ORTHO05D009114 3.9e-09 67.8 73 49.3
Actinidia04897 Actinidia chinensis HOM05D002453 ORTHO05D002107 2.5e-08 65.1 98 35.7
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 4.3e-08 64.3 88 35.2
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 5.6e-08 63.9 105 34.3
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 5.6e-08 63.9 105 34.3
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 9.6e-08 63.2 98 38.8
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 9.6e-08 63.2 99 34.3
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 2.1e-07 62.0 115 30.4
Gohir.D07G165100 Gossypium hirsutum HOM05D008810 ORTHO05D010971 2.1e-07 62.0 78 39.7
Gorai.001G188700 Gossypium raimondii HOM05D008810 ORTHO05D010971 2.1e-07 62.0 78 39.7
Lj4g0014196 Lotus japonicus HOM05D002007 ORTHO05D000355 2.1e-07 62.0 112 32.1
Actinidia37632 Actinidia chinensis HOM05D002453 ORTHO05D002107 2.8e-07 61.6 99 35.4
Glyma.02G192800 Glycine max HOM05D006596 ORTHO05D008497 2.8e-07 61.6 144 28.5
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 3.7e-07 61.2 88 34.1
BcaC01g01383 Brassica carinata HOM05D002453 ORTHO05D008746 4.8e-07 60.8 115 35.7
BcaC07g39437 Brassica carinata HOM05D000424 ORTHO05D000355 4.8e-07 60.8 118 30.5
C03p91440 Brassica napus HOM05D002453 ORTHO05D008746 4.8e-07 60.8 115 35.7
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 4.8e-07 60.8 118 30.5
BolC3t21463H Brassica oleracea HOM05D002753 ORTHO05D003097 4.8e-07 60.8 115 35.7
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 4.8e-07 60.8 118 30.5
Lalb_Chr02g0154271 Lupinus albus HOM05D006596 ORTHO05D008497 4.8e-07 60.8 121 28.1
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 4.8e-07 60.8 126 27.0
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 4.8e-07 60.8 112 31.2
Aqoxy1G01011 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 6.2e-07 60.5 88 34.1
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 6.2e-07 60.5 109 31.2
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 6.2e-07 60.5 97 35.1
SalBow3G1200 Salvia bowleyana HOM05D000855 ORTHO05D008530 6.2e-07 60.5 128 29.7
SalBow3G1712 Salvia bowleyana HOM05D000855 ORTHO05D008530 6.2e-07 60.5 128 29.7
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 8.2e-07 60.1 91 33.0
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 8.2e-07 60.1 89 34.8
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 1.1e-06 59.7 87 35.6
Migut.F01992 Erythranthe guttata HOM05D007390 ORTHO05D009114 1.1e-06 59.7 145 26.2
FAN13G0647 Fragaria x ananassa HOM05D002453 ORTHO05D008746 1.1e-06 59.7 104 34.6
THA.LOC104810436 Tarenaya hassleriana HOM05D002453 ORTHO05D008746 1.1e-06 59.7 78 38.5
BcaC06g36288 Brassica carinata HOM05D006556 ORTHO05D008146 1.4e-06 59.3 73 39.7
A08p01630 Brassica napus HOM05D002453 ORTHO05D008746 1.4e-06 59.3 115 34.8
BraA08t32216Z Brassica rapa HOM05D002453 ORTHO05D008746 1.4e-06 59.3 115 34.8
Cpa.g.sc579.2 Carica papaya HOM05D002007 ORTHO05D000355 1.4e-06 59.3 108 28.7
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 1.4e-06 59.3 126 27.8
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 1.4e-06 59.3 130 27.7
Zm00001eb307450 Zea mays HOM05D000181 ORTHO05D000003 1.4e-06 59.3 102 32.4
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.8e-06 58.9 105 32.4
Migut.B00504 Erythranthe guttata HOM05D005362 ORTHO05D006895 1.8e-06 58.9 117 30.8
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 1.8e-06 58.9 107 30.8
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 1.8e-06 58.9 88 33.0
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 2.4e-06 58.5 105 34.3
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 2.4e-06 58.5 82 36.6
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 3.1e-06 58.2 87 34.5
MSTRG.11331 Avicennia marina HOM05D005362 ORTHO05D006895 3.1e-06 58.2 121 29.8
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 3.1e-06 58.2 104 33.7
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 3.1e-06 58.2 104 33.7
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 3.1e-06 58.2 82 37.8
Eucgr.J00651 Eucalyptus grandis HOM05D004783 ORTHO05D005581 4.0e-06 57.8 93 34.4
TWI38G0410 Tripterygium wilfordii HOM05D002453 ORTHO05D008746 4.0e-06 57.8 101 30.7
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 5.3e-06 57.4 103 32.0
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 5.3e-06 57.4 91 33.0
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 5.3e-06 57.4 103 32.0
Hma1.2p1_0262F.1_g105270 Hydrangea macrophylla HOM05D002007 ORTHO05D000355 5.3e-06 57.4 148 30.4
Lsat_1_v5_gn_3_95641 Lactuca sativa HOM05D000162 ORTHO05D000090 5.3e-06 57.4 119 32.8
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 5.3e-06 57.4 96 34.4
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 5.3e-06 57.4 94 31.9
Psat6g233440 Pisum sativum HOM05D007202 ORTHO05D009125 5.3e-06 57.4 87 36.8
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 6.9e-06 57.0 104 33.7
Haze_25752 Corylus avellana HOM05D006999 ORTHO05D008936 6.9e-06 57.0 101 30.7
Eucgr.G02563 Eucalyptus grandis HOM05D007390 ORTHO05D009114 6.9e-06 57.0 54 50.0
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 6.9e-06 57.0 105 33.3
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 6.9e-06 57.0 87 32.2
AUR62014630 Chenopodium quinoa HOM05D000891 ORTHO05D000761 9.0e-06 56.6 136 27.9
AUR62044184 Chenopodium quinoa HOM05D000891 ORTHO05D000761 9.0e-06 56.6 136 27.9
Ciclev10014547m.g Citrus clementina HOM05D007157 ORTHO05D009045 9.0e-06 56.6 72 36.1
Sabra02G0034700 Salix brachista HOM05D017826 ORTHO05D003288 9.0e-06 56.6 116 31.0


User provided reference genes

Program Settings