Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013159 Daucus carota HOM05D008148 ORTHO05D010295 2.4e-23 111.3 55 100.0
Potri.011G109100 Populus trichocarpa HOM05D008148 ORTHO05D010295 3.5e-11 70.9 48 62.5
Sabra11G0096700 Salix brachista HOM05D008148 ORTHO05D010295 3.5e-11 70.9 44 65.9
Cc05_g11020 Coffea canephora HOM05D008148 ORTHO05D010295 6.1e-11 70.1 51 68.6
CiPaw.11G159800 Carya illinoinensis HOM05D008148 ORTHO05D010295 2.3e-10 68.2 54 61.1
Oeu059259.1 Olea europaea HOM05D008148 ORTHO05D010295 5.1e-10 67.0 40 70.0
Actinidia12583 Actinidia chinensis HOM05D008148 ORTHO05D010295 6.7e-10 66.6 43 62.8
Migut.M00719 Erythranthe guttata HOM05D008148 ORTHO05D010295 6.7e-10 66.6 50 62.0
PGR031G2401 Punica granatum HOM05D008148 ORTHO05D010295 8.7e-10 66.2 41 70.7
SalBow6G6640 Salvia bowleyana HOM05D008148 ORTHO05D010295 1.5e-09 65.5 52 59.6
SalBow7G3203 Salvia bowleyana HOM05D008148 ORTHO05D010295 1.5e-09 65.5 52 59.6
Eucgr.F03276 Eucalyptus grandis HOM05D008148 ORTHO05D010295 1.9e-09 65.1 37 78.4
THA.LOC104812318 Tarenaya hassleriana HOM05D008148 ORTHO05D010295 2.5e-09 64.7 47 59.6
Prupe.4G163600 Prunus persica HOM05D008148 ORTHO05D010295 5.7e-09 63.5 44 61.4
MD11G1264400 Malus domestica HOM05D008148 ORTHO05D010295 7.4e-09 63.2 63 52.4
GSVIVG01014187001 Vitis vinifera HOM05D008148 ORTHO05D010295 7.4e-09 63.2 47 61.7
arahy.Tifrunner.gnm1.ann1.GBF3HF Arachis hypogaea HOM05D008148 ORTHO05D010295 9.7e-09 62.8 48 62.5
Thhalv10009282m.g Eutrema salsugineum HOM05D008148 ORTHO05D010295 1.3e-08 62.4 39 64.1
CARHR017420 Cardamine hirsuta HOM05D008148 ORTHO05D010295 1.6e-08 62.0 36 69.4
MELO3C025654.2 Cucumis melo HOM05D008148 ORTHO05D010295 1.6e-08 62.0 41 63.4
RcHm_v2.0_Chr5g0030781 Rosa chinensis HOM05D008148 ORTHO05D010295 2.2e-08 61.6 44 61.4
SGA_v2.0_scaffold34G13787 Striga asiatica HOM05D008148 ORTHO05D010295 2.2e-08 61.6 42 64.3
CSS0001630 Camellia sinensis var. sinensis HOM05D008148 ORTHO05D010295 2.8e-08 61.2 53 58.5
Cpa.g.sc77.20 Carica papaya HOM05D008148 ORTHO05D010295 2.8e-08 61.2 40 70.0
FAN11G2091 Fragaria x ananassa HOM05D008148 ORTHO05D010295 2.8e-08 61.2 51 58.8
FAN21G2680 Fragaria x ananassa HOM05D008148 ORTHO05D010295 2.8e-08 61.2 51 58.8
Sp1g15050 Schrenkiella parvula HOM05D008148 ORTHO05D010295 2.8e-08 61.2 36 69.4
BcaC07g41389 Brassica carinata HOM05D008148 ORTHO05D010295 3.7e-08 60.8 45 57.8
arahy.Tifrunner.gnm1.ann1.MJJR0W Arachis hypogaea HOM05D008148 ORTHO05D010295 4.8e-08 60.5 38 68.4
A09p60700 Brassica napus HOM05D008148 ORTHO05D010295 4.8e-08 60.5 36 69.4
Manes.15G095500 Manihot esculenta HOM05D008148 ORTHO05D010295 4.8e-08 60.5 41 65.9
Prupe.4G164100 Prunus persica HOM05D008148 ORTHO05D010295 4.8e-08 60.5 36 66.7
TPR.G16053 Trifolium pratense HOM05D008148 ORTHO05D010295 4.8e-08 60.5 40 62.5
CsaV3_4G032950 Cucumis sativus L. HOM05D008148 ORTHO05D010295 6.3e-08 60.1 41 63.4
AL1G29090 Arabidopsis lyrata HOM05D008148 ORTHO05D010295 1.1e-07 59.3 36 66.7
AT1G16916 Arabidopsis thaliana HOM05D008148 ORTHO05D010295 1.1e-07 59.3 36 66.7
C08p44200 Brassica napus HOM05D008148 ORTHO05D010295 1.1e-07 59.3 36 66.7
Carub.0001s1665 Capsella rubella HOM05D008148 ORTHO05D010295 1.1e-07 59.3 36 66.7
Atru.chr2.2119 Acer truncatum HOM05D008148 ORTHO05D010295 1.4e-07 58.9 43 62.8
Psat5g237240 Pisum sativum HOM05D008148 ORTHO05D010295 1.4e-07 58.9 47 53.2
BraA09t41440Z Brassica rapa HOM05D008148 ORTHO05D010295 2.4e-07 58.2 36 66.7
ClCG11G017320 Citrullus lanatus HOM05D008148 ORTHO05D010295 2.4e-07 58.2 44 59.1
Ca_03959_v3 Cicer arietinum L. HOM05D008148 ORTHO05D010295 5.3e-07 57.0 42 57.1
Medtr2g076020 Medicago truncatula HOM05D008148 ORTHO05D010295 5.3e-07 57.0 47 53.2
Duzib213G0597 Durio zibethinus HOM05D008148 ORTHO05D010295 6.9e-07 56.6 51 54.9
Sc03g0010550 Simmondsia chinensis HOM05D008148 ORTHO05D010295 6.9e-07 56.6 54 51.9
Lalb_Chr25g0285821 Lupinus albus HOM05D008148 ORTHO05D010295 9.0e-07 56.2 42 57.1
Gohir.A01G053800 Gossypium hirsutum HOM05D008148 ORTHO05D010295 2.0e-06 55.1 40 60.0
Gohir.D01G042712 Gossypium hirsutum HOM05D008148 ORTHO05D010295 2.0e-06 55.1 40 60.0
Gorai.002G054100 Gossypium raimondii HOM05D008148 ORTHO05D010295 2.0e-06 55.1 40 60.0
Sed0019666 Sechium edule HOM05D008148 ORTHO05D010295 2.0e-06 55.1 41 53.7
Nn1g04456 Nelumbo nucifera HOM05D008148 ORTHO05D010295 3.4e-06 54.3 42 64.3
Thecc.07G117800 Theobroma cacao HOM05D008148 ORTHO05D010295 3.4e-06 54.3 40 57.5
Glyma.12G230300 Glycine max HOM05D008148 ORTHO05D010295 4.5e-06 53.9 39 59.0
Glyma.13G269300 Glycine max HOM05D008148 ORTHO05D010295 5.9e-06 53.5 38 60.5


User provided reference genes

Program Settings