Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013145 Daucus carota HOM05D008023 ORTHO05D002944 1.4e-248 862.8 563 100.0
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 1.1e-22 112.5 551 24.5
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 1.5e-19 102.1 117 50.4
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 1.6e-18 98.6 116 50.9
Actinidia35220 Actinidia chinensis HOM05D008023 ORTHO05D002944 1.4e-17 95.5 116 46.6
CAN.G162.20 Capsicum annuum HOM05D018586 ORTHO05D002944 3.1e-17 94.4 105 42.9
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 5.2e-17 93.6 237 33.8
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 6.8e-17 93.2 540 22.8
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 1.5e-16 92.0 566 24.6
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 2.0e-16 91.7 585 22.7
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 7.6e-16 89.7 134 43.3
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 1.7e-15 88.6 116 42.2
Oeu051114.4 Olea europaea HOM05D008023 ORTHO05D002944 1.1e-14 85.9 205 34.1
Peaxi162Scf00069g02022 Petunia axillaris HOM05D018586 ORTHO05D002944 1.1e-14 85.9 105 40.0
Cc01_g02410 Coffea canephora HOM05D008023 ORTHO05D002944 3.2e-14 84.3 117 41.0
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 9.2e-14 82.8 126 42.9
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 2.1e-13 81.6 623 27.6
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 2.1e-13 81.6 572 30.4
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 3.5e-13 80.9 159 38.4
Nitab4.5_0006539g0020 Nicotiana tabacum HOM05D018586 ORTHO05D002944 3.5e-13 80.9 105 42.9
Nitab4.5_0000246g0140 Nicotiana tabacum HOM05D018586 ORTHO05D002944 4.6e-13 80.5 105 41.0
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.0e-12 79.3 101 40.6
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 1.3e-12 79.0 116 38.8
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.3e-12 79.0 116 38.8
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.7e-12 78.6 126 41.3
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 1.7e-12 78.6 128 39.8
PGSC0003DMG400012394 Solanum tuberosum HOM05D018586 ORTHO05D002944 1.7e-12 78.6 105 41.0
Solyc07g062640.3 Solanum lycopersicum HOM05D018586 ORTHO05D002944 2.3e-12 78.2 105 41.0
Sopen07g030870 Solanum pennellii HOM05D018586 ORTHO05D002944 2.3e-12 78.2 105 41.0
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 3.0e-12 77.8 101 39.6
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 3.0e-12 77.8 123 38.2
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 3.9e-12 77.4 116 38.8
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 5.1e-12 77.0 101 39.6
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 5.1e-12 77.0 116 42.2
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 6.6e-12 76.6 187 34.8
Dinv14971 Davidia involucrata HOM05D000845 ORTHO05D003813 8.6e-12 76.3 84 48.8
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 1.1e-11 75.9 547 22.3
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 1.1e-11 75.9 111 45.0
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.5e-11 75.5 116 37.9
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 2.5e-11 74.7 136 39.7
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 3.3e-11 74.3 543 22.5
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 3.3e-11 74.3 554 23.3
Sabra16G0248200 Salix brachista HOM05D008023 ORTHO05D002944 4.3e-11 73.9 141 37.6
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 5.6e-11 73.6 547 21.2
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 7.3e-11 73.2 111 40.5
CiPaw.11G162800 Carya illinoinensis HOM05D008023 ORTHO05D002944 9.6e-11 72.8 104 41.3
Lj8C151T6 Lonicera japonica HOM05D008023 ORTHO05D010897 9.6e-11 72.8 114 43.0
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 9.6e-11 72.8 178 34.3
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 1.6e-10 72.0 125 40.8
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 1.6e-10 72.0 187 34.8
MD03G1240400 Malus domestica HOM05D008023 ORTHO05D002944 4.7e-10 70.5 147 36.1
MSTRG.14955 Avicennia marina HOM05D008023 ORTHO05D002944 1.1e-09 69.3 176 33.0
TAR626G0818 Trochodendron aralioides HOM05D008023 ORTHO05D002944 1.1e-09 69.3 125 36.8
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 1.4e-09 68.9 196 33.2
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.4e-09 68.9 115 40.9
CARHR124710 Cardamine hirsuta HOM05D004563 ORTHO05D002944 1.8e-09 68.6 60 51.7
Lsat_1_v5_gn_9_99560 Lactuca sativa HOM05D029722 ORTHO05D002944 1.8e-09 68.6 152 34.2
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 2.4e-09 68.2 69 49.3
Haze_09349 Corylus avellana HOM05D008023 ORTHO05D002944 2.4e-09 68.2 103 40.8
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 3.1e-09 67.8 61 54.1
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 3.1e-09 67.8 104 35.6
Migut.M00253 Erythranthe guttata HOM05D004563 ORTHO05D002944 4.0e-09 67.4 89 41.6
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 4.0e-09 67.4 108 34.3
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 4.0e-09 67.4 64 48.4
SalBow8G1085 Salvia bowleyana HOM05D008023 ORTHO05D002944 5.2e-09 67.0 140 32.9
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 5.2e-09 67.0 58 53.4
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 6.8e-09 66.6 58 53.4
BcaB02g10364 Brassica carinata HOM05D004563 ORTHO05D002944 6.8e-09 66.6 57 52.6
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 6.8e-09 66.6 69 46.4
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 6.8e-09 66.6 99 37.4
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 6.8e-09 66.6 133 34.6
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 8.9e-09 66.2 103 35.9
Gohir.A04G038800 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.2e-08 65.9 126 37.3
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 1.2e-08 65.9 79 43.0
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.2e-08 65.9 92 43.5
BcaC02g11198 Brassica carinata HOM05D004563 ORTHO05D002944 1.5e-08 65.5 57 50.9
C04p19350 Brassica napus HOM05D004563 ORTHO05D002944 1.5e-08 65.5 57 50.9
BolC4t23467H Brassica oleracea HOM05D004563 ORTHO05D002944 1.5e-08 65.5 57 50.9
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 2.0e-08 65.1 65 49.2
FvH4_3g25880 Fragaria vesca HOM05D008023 ORTHO05D010897 2.0e-08 65.1 95 38.9
AT2G31130 Arabidopsis thaliana HOM05D004563 ORTHO05D002944 2.6e-08 64.7 58 51.7
A04p23880 Brassica napus HOM05D004563 ORTHO05D002944 2.6e-08 64.7 56 53.6
BraA04t17911Z Brassica rapa HOM05D004563 ORTHO05D002944 2.6e-08 64.7 56 53.6
Carub.0004s1239 Capsella rubella HOM05D004563 ORTHO05D002944 2.6e-08 64.7 58 51.7
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 2.6e-08 64.7 540 22.2
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 2.6e-08 64.7 66 45.5
A05p14540 Brassica napus HOM05D004563 ORTHO05D002944 4.4e-08 63.9 57 50.9
BraA05t20385Z Brassica rapa HOM05D004563 ORTHO05D002944 4.4e-08 63.9 57 50.9
MD11G1259700 Malus domestica HOM05D008023 ORTHO05D002944 4.4e-08 63.9 129 38.0
vmacro12368 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 4.4e-08 63.9 66 47.0
BcaB01g04062 Brassica carinata HOM05D004563 ORTHO05D002944 5.8e-08 63.5 58 50.0
BcaB06g28418 Brassica carinata HOM05D004563 ORTHO05D002944 5.8e-08 63.5 80 41.2
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 5.8e-08 63.5 69 44.9
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 7.6e-08 63.2 76 43.4
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 7.6e-08 63.2 160 31.9
Dinv04617 Davidia involucrata HOM05D000845 ORTHO05D003813 7.6e-08 63.2 59 52.5
AUR62038920 Chenopodium quinoa HOM05D004563 ORTHO05D002944 9.9e-08 62.8 116 34.5
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 9.9e-08 62.8 75 44.0
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 9.9e-08 62.8 86 40.7
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 1.3e-07 62.4 65 47.7
Thhalv10016698m.g Eutrema salsugineum HOM05D004563 ORTHO05D002944 1.3e-07 62.4 58 50.0
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.3e-07 62.4 159 34.0
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 1.3e-07 62.4 159 34.0
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 1.3e-07 62.4 57 50.9
Aa31LG5G5790 Aethionema arabicum HOM05D004563 ORTHO05D002944 1.7e-07 62.0 88 38.6
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 1.7e-07 62.0 118 39.8
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 2.2e-07 61.6 60 48.3
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 2.9e-07 61.2 72 41.7
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 2.9e-07 61.2 65 46.2
Rhsim06G0133100 Rhododendron simsii HOM05D004563 ORTHO05D002944 2.9e-07 61.2 101 33.7
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 2.9e-07 61.2 119 36.1
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 3.8e-07 60.8 61 45.9
MELO3C019761.2 Cucumis melo HOM05D004563 ORTHO05D002944 3.8e-07 60.8 61 45.9
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 3.8e-07 60.8 61 45.9
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 3.8e-07 60.8 100 37.0
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 3.8e-07 60.8 121 35.5
SGA_v2.0_scaffold9G04806 Striga asiatica HOM05D004563 ORTHO05D002944 3.8e-07 60.8 66 47.0
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 4.9e-07 60.5 61 45.9
EL10Ac9g20912 Beta vulgaris HOM05D004563 ORTHO05D002944 6.4e-07 60.1 66 40.9
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 6.4e-07 60.1 97 39.2
THA.LOC104800862 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 6.4e-07 60.1 58 48.3
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 6.4e-07 60.1 69 43.5
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 8.4e-07 59.7 67 46.3
MSTRG.14316 Avicennia marina HOM05D004563 ORTHO05D002944 8.4e-07 59.7 96 33.3
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 8.4e-07 59.7 96 39.6
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 8.4e-07 59.7 100 36.0
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 8.4e-07 59.7 66 45.5
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 1.1e-06 59.3 83 36.1
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 1.1e-06 59.3 89 37.1
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 1.1e-06 59.3 183 29.0
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.4e-06 58.9 91 34.1
PSO675G1487 Papaver somniferum HOM05D004563 ORTHO05D002944 1.4e-06 58.9 61 41.0
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 1.4e-06 58.9 56 50.0
Sed0004710 Sechium edule HOM05D004563 ORTHO05D002944 1.4e-06 58.9 64 43.8
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 1.4e-06 58.9 111 35.1
AUR62038995 Chenopodium quinoa HOM05D007922 ORTHO05D009490 1.9e-06 58.5 58 46.6
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 1.9e-06 58.5 118 33.1
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 1.9e-06 58.5 66 45.5
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 1.9e-06 58.5 66 43.9
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 2.4e-06 58.2 97 34.0
Rhsim04G0073900 Rhododendron simsii HOM05D004563 ORTHO05D002944 2.4e-06 58.2 63 46.0
Sed0020403 Sechium edule HOM05D004563 ORTHO05D002944 2.4e-06 58.2 64 43.8
ECA240G4386 Erigeron canadensis HOM05D029722 ORTHO05D035124 3.2e-06 57.8 155 31.6
Migut.M00743 Erythranthe guttata HOM05D008023 ORTHO05D002944 3.2e-06 57.8 140 32.9
Sed0024688 Sechium edule HOM05D008023 ORTHO05D002944 3.2e-06 57.8 93 38.7
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 4.2e-06 57.4 66 42.4
Hma1.2p1_0178F.1_g078980 Hydrangea macrophylla HOM05D004563 ORTHO05D002944 5.4e-06 57.0 115 37.4
MD09G1239700 Malus domestica HOM05D004563 ORTHO05D002944 5.4e-06 57.0 97 34.0
PSO541G0319 Papaver somniferum HOM05D004563 ORTHO05D002944 5.4e-06 57.0 61 39.3
arahy.Tifrunner.gnm1.ann1.B2LHN7 Arachis hypogaea HOM05D004563 ORTHO05D002944 7.1e-06 56.6 104 30.8
A03p17400 Brassica napus HOM05D004563 ORTHO05D002944 7.1e-06 56.6 58 43.1
BraA03t11011Z Brassica rapa HOM05D004563 ORTHO05D002944 7.1e-06 56.6 58 43.1
COL.COLO4_17605 Corchorus olitorius HOM05D008023 ORTHO05D002944 7.1e-06 56.6 60 45.0
Eucgr.F01214 Eucalyptus grandis HOM05D008023 ORTHO05D010897 7.1e-06 56.6 112 36.6
Eucgr.L01514 Eucalyptus grandis HOM05D008023 ORTHO05D010897 7.1e-06 56.6 99 38.4
Peaxi162Scf00384g00511 Petunia axillaris HOM05D004563 ORTHO05D002944 7.1e-06 56.6 66 42.4
Potri.019G089900 Populus trichocarpa HOM05D004563 ORTHO05D002944 7.1e-06 56.6 99 33.3
PGR083G0067 Punica granatum HOM05D008023 ORTHO05D010897 7.1e-06 56.6 89 42.7
unitig_747.g21618 Utricularia gibba HOM05D004563 ORTHO05D002944 9.3e-06 56.2 67 40.3


User provided reference genes

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