Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 1.4e-105 386.3 196 100.0
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 2.3e-76 289.3 187 77.5
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 7.3e-75 284.3 186 74.7
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 7.3e-75 284.3 186 74.7
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 7.3e-75 284.3 186 74.7
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 1.2e-74 283.5 186 75.3
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 8.0e-74 280.8 186 72.0
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.8e-73 279.6 186 73.7
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.8e-73 279.6 186 74.2
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 2.0e-72 276.2 186 72.0
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 2.6e-72 275.8 186 72.6
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 2.6e-72 275.8 186 72.6
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.7e-71 273.1 186 71.0
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.7e-71 273.1 186 71.0
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.7e-71 273.1 186 71.0
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 3.7e-71 271.9 186 70.4
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 8.3e-71 270.8 185 70.3
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 8.3e-71 270.8 185 70.3
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 1.1e-70 270.4 186 70.4
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 1.4e-70 270.0 189 72.5
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.9e-70 269.6 185 73.0
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 2.4e-70 269.2 188 73.4
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 4.1e-70 268.5 187 68.4
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 9.2e-70 267.3 185 71.4
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 9.2e-70 267.3 207 66.2
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 9.2e-70 267.3 187 72.2
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 2.1e-69 266.2 201 66.7
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 2.1e-69 266.2 188 72.3
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 2.7e-69 265.8 191 73.3
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 3.5e-69 265.4 186 69.9
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 3.5e-69 265.4 188 70.7
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 3.5e-69 265.4 187 70.1
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.6e-69 265.0 186 72.0
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.6e-69 265.0 186 71.5
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 4.6e-69 265.0 186 71.5
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 4.6e-69 265.0 187 69.5
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 6.0e-69 264.6 186 69.4
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 1.0e-68 263.8 183 71.0
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.3e-68 263.5 187 69.5
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.7e-68 263.1 192 69.3
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 1.7e-68 263.1 184 67.9
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.7e-68 263.1 188 70.2
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 2.3e-68 262.7 186 68.3
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 3.0e-68 262.3 185 69.7
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 3.0e-68 262.3 188 66.0
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 3.0e-68 262.3 190 67.9
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 5.0e-68 261.5 185 69.2
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 6.6e-68 261.2 177 70.6
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 8.6e-68 260.8 186 70.4
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.1e-67 260.4 184 69.0
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 1.5e-67 260.0 186 68.3
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.5e-67 260.0 186 67.2
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 1.9e-67 259.6 182 70.3
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.5e-67 259.2 186 67.7
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 2.5e-67 259.2 188 66.5
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 3.3e-67 258.8 184 68.5
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 5.6e-67 258.1 186 69.4
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 5.6e-67 258.1 186 68.8
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 5.6e-67 258.1 185 69.2
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 7.3e-67 257.7 185 67.6
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 7.3e-67 257.7 185 68.1
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.2e-66 256.9 198 66.7
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.6e-66 256.5 188 69.1
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 2.1e-66 256.1 198 66.2
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 2.1e-66 256.1 188 66.0
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.8e-66 255.8 181 70.2
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 2.8e-66 255.8 190 69.5
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 1.4e-65 253.4 188 63.8
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.8e-65 253.1 188 69.1
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 2.3e-65 252.7 185 67.6
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 2.3e-65 252.7 186 66.1
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.1e-65 252.3 188 68.6
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 4.0e-65 251.9 209 63.6
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 6.8e-65 251.1 174 71.3
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 8.9e-65 250.8 204 63.2
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 5.8e-64 248.1 188 67.6
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 2.2e-63 246.1 177 66.1
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 2.2e-63 246.1 174 66.1
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 2.9e-63 245.7 152 78.3
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 8.3e-63 244.2 193 62.2
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 4.1e-62 241.9 184 62.0
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 9.2e-62 240.7 188 63.8
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 1.2e-61 240.4 177 64.4
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 2.1e-61 239.6 177 64.4
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 6.0e-61 238.0 185 62.7
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 2.3e-60 236.1 186 62.4
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 3.9e-60 235.3 185 62.7
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 3.3e-59 232.3 184 62.0
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 4.3e-59 231.9 184 61.4
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 9.5e-59 230.7 182 62.1
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.1e-57 227.3 190 58.4
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 5.2e-57 224.9 182 59.9
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 8.9e-57 224.2 157 70.1
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 8.9e-57 224.2 275 46.2
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 5.8e-56 221.5 177 58.2
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.3e-55 220.3 187 59.9
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.8e-55 218.8 178 60.1
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 4.2e-54 215.3 154 66.9
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.7e-52 209.9 160 63.8
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 1.5e-51 206.8 192 53.6
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.6e-48 196.1 190 53.7
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 1.7e-47 193.4 191 52.4
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 2.9e-47 192.6 191 51.3
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 4.9e-47 191.8 191 51.8
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 2.4e-46 189.5 191 51.8
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 2.4e-46 189.5 205 51.7
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 5.4e-46 188.3 185 53.0
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 1.3e-44 183.7 187 51.9
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 2.3e-44 183.0 191 51.3
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 5.1e-44 181.8 172 58.1
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 6.6e-44 181.4 185 54.6
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 8.1e-42 174.5 185 50.8
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 3.1e-41 172.6 185 50.8
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 1.3e-39 167.2 185 49.2
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 3.8e-39 165.6 185 48.6
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 3.8e-39 165.6 185 48.6
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 3.8e-39 165.6 185 48.6
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 1.4e-38 163.7 185 48.6
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 2.4e-38 162.9 185 47.6
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 2.4e-38 162.9 185 47.6
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 9.3e-38 161.0 112 72.3
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 6.7e-36 154.8 141 56.7
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.3e-34 150.6 155 55.5
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 9.9e-32 141.0 185 45.4
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 3.0e-28 129.4 113 60.2
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 3.7e-26 122.5 78 71.8
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 4.2e-22 109.0 74 68.9
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 9.3e-22 107.8 87 59.8
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.2e-21 107.5 99 54.5
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 2.3e-20 103.2 86 59.3
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 7.4e-19 98.2 157 36.9
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 1.6e-18 97.1 137 39.4
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.7e-18 95.9 81 59.3
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.7e-18 95.9 76 60.5
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 6.3e-18 95.1 86 59.3
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.1e-17 94.4 76 59.2
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 3.1e-17 92.8 119 38.7
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 3.1e-17 92.8 59 81.4
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 1.1e-14 84.3 159 30.2
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 2.3e-12 76.6 81 54.3
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 4.3e-11 72.4 66 57.6
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 4.8e-10 68.9 90 48.9
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 7.2e-06 55.1 45 57.8


User provided reference genes

Program Settings