Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 8.3e-120 433.7 218 100.0
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 3.0e-61 239.2 187 63.1
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.1e-60 237.3 205 60.0
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 1.5e-60 236.9 185 61.6
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 1.9e-60 236.5 187 62.0
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 1.9e-60 236.5 192 63.0
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 2.5e-60 236.1 187 61.5
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 9.6e-60 234.2 198 61.1
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 1.3e-59 233.8 190 60.5
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.6e-59 233.4 196 59.2
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 3.6e-59 232.3 188 61.7
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 4.8e-59 231.9 196 60.7
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 1.1e-58 230.7 195 57.4
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 2.4e-58 229.6 197 59.4
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 9.0e-58 227.6 198 60.1
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.2e-57 227.3 197 58.9
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 3.4e-57 225.7 197 57.9
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 4.5e-57 225.3 185 59.5
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 5.8e-57 224.9 187 59.4
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 9.9e-57 224.2 207 54.6
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 2.9e-56 222.6 196 56.1
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 3.8e-56 222.2 192 60.4
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 8.4e-56 221.1 192 58.3
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 1.1e-55 220.7 195 54.4
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 1.4e-55 220.3 187 59.9
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 1.9e-55 219.9 197 56.3
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 1.9e-55 219.9 200 53.5
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 1.9e-55 219.9 189 57.7
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 2.4e-55 219.5 197 56.3
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 3.2e-55 219.2 190 56.8
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 3.2e-55 219.2 206 53.9
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 4.2e-55 218.8 195 57.9
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 5.5e-55 218.4 195 56.9
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 7.1e-55 218.0 182 57.7
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 1.2e-54 217.2 187 58.3
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.6e-54 216.9 191 57.1
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 2.1e-54 216.5 187 56.7
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 2.7e-54 216.1 190 55.3
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 4.6e-54 215.3 205 54.1
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 1.0e-53 214.2 185 56.8
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 1.3e-53 213.8 205 53.7
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.3e-53 213.8 193 55.4
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 1.3e-53 213.8 187 55.1
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 3.0e-53 212.6 198 56.1
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 3.9e-53 212.2 187 56.7
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 5.1e-53 211.8 197 54.3
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 6.7e-53 211.5 191 57.1
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 3.3e-52 209.1 195 57.4
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 5.6e-52 208.4 182 56.0
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 1.6e-51 206.8 188 56.9
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 2.8e-51 206.1 195 53.8
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 3.7e-51 205.7 182 57.1
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 3.7e-51 205.7 205 51.7
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 4.8e-51 205.3 198 54.0
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 6.2e-51 204.9 202 52.0
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 6.2e-51 204.9 182 56.0
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 8.1e-51 204.5 202 52.0
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 1.1e-50 204.1 195 53.8
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.4e-50 203.8 195 53.8
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 2.4e-50 203.0 185 54.6
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.4e-50 203.0 190 54.2
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 3.1e-50 202.6 195 51.3
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 4.0e-50 202.2 200 53.0
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 6.9e-50 201.4 210 51.0
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 9.0e-50 201.1 195 54.9
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.5e-49 200.3 188 53.7
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 2.0e-49 199.9 182 53.8
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 3.4e-49 199.1 195 51.8
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 7.6e-49 198.0 188 53.7
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 7.6e-49 198.0 198 51.0
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 7.6e-49 198.0 188 53.2
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.0e-48 197.6 196 51.5
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 1.0e-48 197.6 196 51.5
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.3e-48 197.2 185 54.1
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.3e-48 197.2 182 53.8
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 1.7e-48 196.8 197 51.3
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 2.2e-48 196.4 197 51.3
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 2.2e-48 196.4 195 51.8
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 3.8e-48 195.7 185 54.1
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 3.8e-48 195.7 214 48.6
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 6.5e-48 194.9 189 51.3
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 1.4e-47 193.7 214 50.0
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.6e-46 190.3 185 53.5
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 3.5e-46 189.1 195 51.8
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 6.0e-46 188.3 213 48.8
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 1.0e-45 187.6 197 50.3
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 5.1e-45 185.3 201 48.8
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 2.1e-43 179.9 214 46.3
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 4.8e-43 178.7 215 47.0
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.4e-42 176.4 203 43.3
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 2.4e-42 176.4 205 44.4
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 3.1e-42 176.0 211 47.9
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 6.9e-42 174.9 203 43.3
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.5e-41 173.7 203 43.3
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.4e-39 167.2 216 44.9
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.0e-37 161.0 146 57.5
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 1.1e-36 157.5 194 43.8
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.5e-36 157.1 183 44.3
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 4.3e-36 155.6 182 44.0
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 1.6e-35 153.7 182 43.4
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.6e-35 153.7 203 40.4
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 6.3e-35 151.8 201 40.8
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 2.4e-34 149.8 189 42.9
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 2.4e-34 149.8 189 42.9
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 2.4e-34 149.8 133 59.4
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 3.1e-34 149.4 300 33.3
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.5e-33 147.1 182 43.4
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 5.5e-31 138.7 125 57.6
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 1.3e-27 127.5 195 39.0
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 1.7e-27 127.1 134 46.3
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.8e-26 123.6 160 41.9
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 4.1e-26 122.5 205 41.0
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 2.0e-25 120.2 119 46.2
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 2.0e-25 120.2 119 46.2
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.0e-25 120.2 142 46.5
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 2.9e-24 116.3 242 32.2
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.1e-23 114.4 201 34.8
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 1.4e-23 114.0 192 35.4
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 2.1e-22 110.2 178 38.2
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 4.7e-22 109.0 113 49.6
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 3.0e-21 106.3 133 47.4
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-19 100.9 86 59.3
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 3.0e-13 79.7 119 38.7
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 3.0e-13 79.7 119 38.7
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 5.2e-13 79.0 119 37.8
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 1.2e-12 77.8 119 37.8
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 1.2e-12 77.8 119 37.8
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 8.2e-11 71.6 114 37.7
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.6e-09 67.4 50 58.0
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 3.5e-09 66.2 37 81.1
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 4.5e-09 65.9 197 29.9
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 2.2e-08 63.5 159 32.1
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.5e-07 60.8 94 36.2
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 2.5e-07 60.1 55 60.0
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 5.5e-07 58.9 52 55.8
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.2e-06 57.8 35 74.3
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.2e-06 57.8 35 74.3
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.2e-06 57.8 35 74.3
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.2e-06 57.8 35 74.3
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.2e-06 57.8 35 74.3
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 2.7e-06 56.6 90 44.4
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 2.7e-06 56.6 264 24.2
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 3.6e-06 56.2 35 71.4


User provided reference genes

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