Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 6.2e-310 1066.6 540 100.0
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.4e-198 694.1 540 66.3
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.4e-198 694.1 540 66.3
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.2e-197 691.8 543 65.2
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.6e-196 689.9 543 65.2
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 4.3e-194 681.8 559 64.2
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.4e-192 676.0 556 62.8
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 3.4e-191 672.2 556 62.1
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.2e-190 669.5 558 62.9
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 2.2e-190 669.5 554 64.1
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 6.4e-190 667.9 550 64.5
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 8.4e-190 667.5 550 63.3
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 1.4e-189 666.8 549 62.7
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 4.2e-189 665.2 551 62.3
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 2.1e-188 662.9 554 63.5
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 4.6e-188 661.8 574 60.8
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 6.0e-188 661.4 547 62.9
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 3.9e-187 658.7 547 62.3
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 5.1e-187 658.3 548 62.4
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.1e-186 657.1 553 63.5
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.5e-186 656.8 552 62.0
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.3e-185 653.7 549 63.9
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.1e-185 652.9 547 63.1
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.4e-184 650.2 545 62.9
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 5.3e-184 648.3 548 62.4
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 5.3e-184 648.3 555 61.6
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 6.9e-184 647.9 536 64.0
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 9.0e-184 647.5 526 63.7
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 2.6e-183 646.0 547 61.2
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 2.6e-183 646.0 548 62.0
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 4.5e-183 645.2 560 60.2
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.0e-182 644.0 561 59.9
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 3.8e-182 642.1 559 61.7
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 3.8e-182 642.1 547 61.2
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.8e-182 642.1 555 60.5
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 4.9e-182 641.7 548 61.1
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 1.4e-181 640.2 546 60.6
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.4e-181 640.2 545 60.4
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 1.9e-181 639.8 543 60.2
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.2e-180 637.1 539 62.3
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.6e-180 636.7 539 63.1
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 2.7e-180 636.0 559 60.3
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.0e-179 634.0 543 61.1
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 1.0e-179 634.0 550 61.1
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 3.0e-179 632.5 574 59.2
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 3.0e-179 632.5 574 59.2
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 3.0e-179 632.5 574 59.2
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 3.9e-179 632.1 574 59.2
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 5.1e-179 631.7 550 59.8
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.1e-178 630.6 544 59.7
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 1.1e-178 630.6 544 60.5
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.5e-178 630.2 569 58.5
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.9e-178 629.8 545 60.2
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 4.3e-178 628.6 547 60.5
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 7.4e-178 627.9 554 60.6
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 7.4e-178 627.9 558 60.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.6e-177 626.7 571 58.5
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 2.8e-177 625.9 575 57.7
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.8e-177 625.9 573 58.3
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 4.8e-177 625.2 574 58.4
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 4.8e-177 625.2 572 58.7
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.1e-176 624.0 572 58.6
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.8e-176 623.2 550 59.8
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-176 622.9 574 58.4
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 4.1e-176 622.1 570 58.8
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.7e-174 616.7 553 61.1
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 2.9e-174 615.9 547 59.0
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 2.9e-174 615.9 557 58.5
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 2.9e-174 615.9 539 58.6
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 6.5e-174 614.8 554 58.7
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.9e-173 613.2 493 65.7
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.5e-173 612.8 555 58.7
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 3.2e-173 612.5 550 59.1
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 3.2e-173 612.5 547 59.2
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 4.2e-173 612.1 541 59.9
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 4.2e-173 612.1 435 70.1
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 4.2e-173 612.1 556 58.3
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.2e-172 610.5 558 58.8
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.1e-172 609.8 561 57.9
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 4.6e-172 608.6 559 56.5
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 7.9e-172 607.8 548 58.8
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 3.9e-171 605.5 546 58.8
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 3.9e-171 605.5 541 58.8
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.9e-171 605.5 577 56.0
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 5.1e-171 605.1 554 57.9
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.5e-170 603.6 541 59.5
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.5e-170 603.6 542 58.3
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.5e-170 602.8 456 65.8
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 5.7e-170 601.7 557 57.6
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.3e-169 600.5 539 57.5
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 4.8e-169 598.6 570 56.7
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.8e-168 596.7 548 56.4
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 3.1e-168 595.9 552 58.0
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 4.1e-168 595.5 554 57.4
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 3.4e-167 592.4 559 56.7
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 5.0e-166 588.6 397 71.3
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-165 587.0 564 55.7
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.4e-165 587.0 569 56.6
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 7.9e-164 581.3 574 55.9
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 2.3e-163 579.7 570 56.0
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 2.6e-162 576.2 435 66.2
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 9.7e-162 574.3 566 54.9
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.3e-161 571.6 540 56.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 2.6e-159 566.2 438 62.8
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.7e-158 563.5 559 55.6
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 4.2e-157 558.9 435 65.1
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 2.3e-155 553.1 536 56.3
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 5.7e-154 548.5 552 55.6
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.6e-151 540.4 579 52.2
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 3.5e-151 539.3 564 54.6
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.7e-150 537.0 401 66.6
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 8.5e-150 534.6 384 69.8
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.5e-149 533.1 553 54.6
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 1.0e-147 527.7 548 53.5
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 3.0e-147 526.2 548 53.3
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 2.4e-144 516.5 547 53.4
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 3.5e-143 512.7 554 51.8
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 3.8e-142 509.2 354 69.2
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 8.0e-140 501.5 337 72.4
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.6e-132 476.1 426 58.0
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 6.8e-131 471.9 511 49.9
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.1e-124 450.3 301 74.1
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 6.1e-124 448.7 549 47.9
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 6.8e-123 445.3 539 50.5
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.7e-118 430.6 440 47.7
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 6.4e-105 385.6 474 48.7
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 2.4e-96 357.1 499 45.3
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 3.9e-94 349.7 375 46.4
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 6.2e-92 342.4 391 50.9
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 2.1e-84 317.4 197 74.6
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 6.0e-79 299.3 390 45.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.3e-77 293.5 210 64.8
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.8e-76 289.7 357 46.8
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.6e-74 283.9 264 55.7
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 2.2e-73 280.8 382 46.6
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.1e-68 264.2 155 80.0
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 1.1e-51 208.8 190 57.4
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 2.3e-38 164.5 262 41.2
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 8.8e-38 162.5 275 38.2
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 1.8e-35 154.8 201 47.8
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.0e-34 151.4 177 52.0
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 8.0e-31 139.4 90 71.1
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 6.8e-30 136.3 90 70.0
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 4.8e-28 130.2 470 26.6
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.6e-23 115.2 79 68.4
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 3.4e-21 107.5 115 48.7
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.8e-19 101.7 68 69.1
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 5.4e-19 100.1 68 67.6
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 7.0e-19 99.8 68 67.6
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 7.0e-19 99.8 180 31.1
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.4e-14 85.5 147 39.5
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 4.0e-14 84.0 51 76.5
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 5.2e-14 83.6 69 58.0
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.3e-08 64.3 76 51.3
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.3e-08 64.3 61 59.0
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.2e-07 62.4 118 35.6


User provided reference genes

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