Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 3.6e-109 398.3 203 100.0
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 2.7e-88 328.9 201 82.1
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 7.8e-88 327.4 200 81.5
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.0e-87 327.0 200 81.5
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.0e-87 327.0 200 81.5
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 2.5e-86 322.4 203 79.8
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 2.5e-86 322.4 201 80.6
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 3.3e-86 322.0 203 80.8
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 3.3e-86 322.0 201 81.6
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 5.6e-86 321.2 203 79.3
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.2e-85 320.1 203 80.8
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 1.6e-85 319.7 202 79.7
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 3.6e-85 318.5 201 79.1
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 3.6e-85 318.5 195 82.1
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.7e-85 318.2 192 82.3
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 6.1e-85 317.8 195 81.0
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 6.1e-85 317.8 195 81.0
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 8.0e-85 317.4 195 82.1
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.0e-84 317.0 201 78.6
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.4e-84 316.6 201 80.6
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.4e-84 316.6 196 81.6
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.8e-84 316.2 203 78.3
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.8e-84 316.2 203 78.3
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.8e-84 316.2 203 78.8
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 4.0e-84 315.1 203 77.3
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 4.0e-84 315.1 203 77.8
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 5.2e-84 314.7 201 78.6
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.2e-83 313.5 201 77.6
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-83 313.5 203 77.8
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.2e-83 313.5 203 78.3
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.5e-83 313.2 203 77.3
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 1.5e-83 313.2 203 76.8
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.0e-83 312.8 203 77.8
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 2.6e-83 312.4 203 77.3
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 3.4e-83 312.0 203 77.8
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 3.4e-83 312.0 203 77.8
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 4.4e-83 311.6 202 77.7
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 5.8e-83 311.2 203 77.8
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 7.5e-83 310.8 203 76.8
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.3e-82 310.1 203 76.8
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.3e-82 310.1 202 76.2
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 1.3e-82 310.1 203 77.3
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.7e-82 309.7 201 75.1
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 2.9e-82 308.9 200 75.5
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 2.9e-82 308.9 200 78.0
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 3.7e-82 308.5 202 76.2
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 4.9e-82 308.1 202 76.2
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 8.3e-82 307.4 194 79.4
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 8.3e-82 307.4 200 76.5
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.1e-81 307.0 201 74.1
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.1e-81 307.0 202 77.2
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.2e-81 305.4 227 70.9
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 4.1e-81 305.1 203 76.4
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.0e-80 302.8 227 69.6
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 6.0e-80 301.2 202 77.2
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 7.8e-80 300.8 190 77.9
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.3e-79 300.1 203 76.4
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.7e-79 299.7 201 74.6
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.3e-79 299.3 182 81.9
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 3.9e-79 298.5 203 76.4
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.9e-79 298.5 203 76.4
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 3.9e-79 298.5 186 81.2
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.1e-78 297.0 201 73.6
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.1e-78 297.0 203 76.4
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.1e-78 297.0 198 75.8
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 4.3e-78 295.0 203 75.9
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 5.6e-78 294.7 193 77.7
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 9.5e-78 293.9 198 74.2
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.2e-77 293.5 196 75.5
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.6e-77 293.1 203 73.4
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 2.1e-77 292.7 203 74.9
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 4.7e-77 291.6 201 72.6
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 6.2e-77 291.2 202 73.3
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.8e-76 289.7 201 72.6
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 2.3e-76 289.3 204 71.6
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 2.3e-76 289.3 202 71.8
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 2.3e-76 289.3 202 73.8
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 2.3e-76 289.3 202 73.8
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.0e-76 288.5 198 71.7
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 4.0e-76 288.5 194 75.3
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 5.2e-76 288.1 199 73.9
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 6.8e-76 287.7 194 75.3
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.2e-75 287.0 194 75.3
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 3.4e-75 285.4 201 71.6
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 9.8e-75 283.9 194 74.2
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.3e-74 283.5 194 73.7
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 2.2e-74 282.7 194 75.3
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.9e-74 282.3 193 75.6
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 3.7e-74 282.0 178 77.5
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 8.3e-74 280.8 194 73.2
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 8.3e-74 280.8 197 70.6
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.1e-73 280.4 175 78.9
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.9e-73 279.6 194 73.2
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.9e-73 279.6 194 73.7
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 1.9e-73 279.6 192 74.5
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 2.4e-73 279.3 193 74.1
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 5.4e-73 278.1 191 74.3
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 5.4e-73 278.1 178 77.5
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 9.2e-73 277.3 194 70.6
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 1.2e-72 276.9 194 73.2
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 2.7e-72 275.8 191 73.8
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 2.7e-72 275.8 191 73.8
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 2.7e-72 275.8 193 68.4
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 3.5e-72 275.4 192 74.5
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 3.9e-71 271.9 188 74.5
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 6.6e-71 271.2 195 69.2
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 2.1e-69 266.2 200 67.5
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.2e-69 264.6 201 70.1
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 8.1e-69 264.2 185 74.1
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 8.1e-69 264.2 201 70.1
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 3.1e-68 262.3 201 69.7
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.2e-67 260.4 179 72.6
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.6e-67 259.2 201 69.2
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 4.4e-67 258.5 193 68.9
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 4.4e-67 258.5 191 71.2
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.7e-66 256.5 201 66.2
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.9e-66 255.0 180 70.6
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.9e-65 253.1 192 67.7
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 9.2e-65 250.8 192 67.7
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 6.0e-64 248.1 163 76.1
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 3.9e-63 245.4 192 66.7
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 3.3e-62 242.3 194 64.4
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 8.4e-58 227.6 158 72.8
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 8.4e-58 227.6 158 72.8
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 2.4e-57 226.1 171 69.0
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 7.1e-57 224.6 185 62.2
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.2e-56 223.8 186 64.5
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.3e-55 220.3 196 63.8
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 1.3e-55 220.3 185 61.1
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 1.5e-54 216.9 188 58.5
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 6.9e-52 208.0 205 59.5
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.4e-49 200.3 130 76.2
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 7.9e-48 194.5 193 58.0
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.3e-45 187.2 199 54.8
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.8e-44 183.3 113 79.6
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 1.2e-43 180.6 111 79.3
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.2e-41 172.2 178 50.0
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 8.7e-39 164.5 94 84.0
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 5.6e-38 161.8 194 45.4
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.7e-34 150.2 210 48.6
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 9.3e-33 144.4 88 79.5
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.1e-25 120.9 156 41.7
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.5e-24 115.9 188 41.5
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.8e-23 113.6 177 38.4
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 3.3e-22 109.4 70 75.7
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 7.4e-22 108.2 177 39.0
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 4.1e-20 102.4 183 36.6
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 3.2e-17 92.8 67 68.7
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 9.4e-17 91.3 68 69.1
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 1.8e-15 87.0 67 64.2
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 7.4e-14 81.6 58 67.2
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 6.3e-13 78.6 104 44.2
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.4e-12 77.4 113 47.8
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 2.4e-12 76.6 62 61.3
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 1.6e-08 63.9 150 35.3
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 2.1e-08 63.5 38 78.9
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 2.1e-08 63.5 71 54.9
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 7.4e-06 55.1 48 60.4
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 7.4e-06 55.1 48 60.4


User provided reference genes

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