Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 2.6e-308 1061.2 528 100.0
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 8.8e-176 620.9 542 60.5
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 1.5e-167 593.6 555 58.0
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.8e-165 586.6 549 57.9
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.8e-165 586.6 549 57.9
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 1.3e-163 580.5 539 57.5
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.1e-162 577.4 531 58.0
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 5.6e-162 575.1 532 57.7
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 8.0e-161 571.2 518 60.4
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 1.0e-160 570.9 531 56.3
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.0e-160 568.9 554 55.6
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 6.8e-160 568.2 532 56.2
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.2e-159 567.4 533 56.1
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 2.6e-159 566.2 533 54.8
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 5.8e-159 565.1 528 56.1
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.1e-157 560.8 554 56.1
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.9e-157 560.1 528 56.2
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.9e-157 560.1 528 56.2
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 1.2e-156 557.4 530 55.7
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 5.0e-155 552.0 528 55.1
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 2.5e-154 549.7 540 55.0
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.2e-153 547.4 535 56.1
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.1e-152 544.3 523 55.8
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 6.8e-152 541.6 553 54.8
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 1.2e-151 540.8 542 52.6
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 5.8e-151 538.5 538 54.1
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 7.5e-151 538.1 537 52.7
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.3e-150 537.3 536 53.5
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 1.3e-150 537.3 542 53.5
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 4.9e-150 535.4 536 54.5
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.1e-149 534.3 545 54.3
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 5.4e-149 531.9 536 54.7
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 3.5e-148 529.3 528 52.1
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 4.6e-148 528.9 537 52.7
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 2.3e-147 526.6 540 53.3
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 6.6e-147 525.0 530 52.1
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 1.9e-146 523.5 546 50.7
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 1.9e-146 523.5 529 54.1
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 1.9e-146 523.5 540 53.1
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 2.5e-146 523.1 532 54.1
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 2.5e-146 523.1 530 54.2
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 3.3e-146 522.7 535 52.7
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 1.2e-145 520.8 528 54.0
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 2.1e-145 520.0 527 53.9
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 2.1e-145 520.0 538 51.7
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.1e-145 520.0 535 52.3
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 2.8e-145 519.6 548 52.4
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 4.7e-145 518.8 536 52.1
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.1e-144 517.7 532 51.9
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 8.9e-144 514.6 527 53.5
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.6e-143 513.1 532 52.4
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 4.4e-143 512.3 531 51.4
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 7.5e-143 511.5 546 50.2
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 2.2e-142 510.0 534 51.1
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 2.2e-142 510.0 551 50.5
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 3.7e-142 509.2 533 51.6
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 4.9e-142 508.8 530 51.9
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 6.4e-142 508.4 535 52.1
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 8.3e-142 508.1 545 51.4
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 7.1e-141 505.0 533 51.2
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.5e-138 497.3 550 49.5
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.6e-137 493.8 526 52.7
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.1e-136 491.1 533 49.5
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 2.4e-136 490.0 535 49.9
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 4.0e-136 489.2 529 50.3
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 8.4e-134 481.5 558 48.6
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 5.4e-133 478.8 528 48.3
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 2.1e-132 476.9 520 50.6
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 3.5e-132 476.1 528 50.4
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 5.1e-131 472.2 528 50.4
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 2.5e-130 469.9 530 50.0
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 3.3e-130 469.5 536 47.4
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 4.7e-129 465.7 533 49.3
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 9.0e-128 461.5 554 46.0
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.5e-127 460.7 494 50.2
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 4.4e-127 459.1 530 46.2
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.9e-126 456.4 527 50.1
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.9e-125 453.8 536 46.1
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.0e-123 448.0 535 45.2
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.3e-123 446.8 534 44.4
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 1.1e-122 444.5 533 46.3
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.5e-122 444.1 541 45.3
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 3.3e-122 443.0 531 44.6
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 5.6e-122 442.2 541 46.4
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 2.1e-121 440.3 530 44.5
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 3.6e-121 439.5 496 51.2
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 1.1e-120 438.0 531 45.8
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 4.0e-120 436.0 528 45.8
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 6.9e-120 435.3 528 45.8
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 9.0e-120 434.9 530 45.5
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 1.5e-119 434.1 535 44.9
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 3.4e-119 433.0 534 44.9
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 5.8e-119 432.2 531 46.0
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 2.9e-118 429.9 527 46.9
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 2.9e-118 429.9 521 45.7
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 4.9e-118 429.1 559 44.9
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 6.4e-118 428.7 534 44.0
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 8.4e-118 428.3 533 44.1
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 9.3e-117 424.9 534 44.8
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 3.5e-116 422.9 490 49.6
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 2.1e-113 413.7 536 43.7
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 3.7e-113 412.9 519 44.5
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.5e-111 407.5 528 45.1
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 4.5e-111 406.0 528 45.3
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 1.3e-110 404.4 535 44.7
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 9.3e-109 398.3 536 42.2
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 3.5e-108 396.4 536 43.5
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.1e-107 392.5 513 43.5
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 6.2e-105 385.6 571 41.3
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.8e-104 384.0 539 41.0
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.5e-103 380.9 541 40.7
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.1e-101 374.8 550 40.5
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 3.3e-98 363.2 537 40.2
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 4.3e-98 362.8 524 43.3
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.2e-93 346.7 514 40.1
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 7.9e-92 342.0 558 36.4
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 3.8e-86 323.2 409 44.7
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 3.9e-83 313.2 529 37.4
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-81 308.1 503 36.6
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.7e-81 307.8 505 36.6
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 2.2e-81 307.4 492 38.6
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.5e-78 295.8 530 36.4
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.7e-76 290.4 529 37.8
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.6e-76 290.0 529 37.6
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 3.8e-70 270.0 516 33.9
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 2.6e-66 257.3 532 33.1
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.0e-60 235.7 481 33.9
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.0e-60 235.7 481 33.9
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.0e-54 216.5 386 36.3
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 5.7e-50 203.0 270 46.3
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 9.5e-45 185.7 317 36.9
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 4.4e-42 176.8 542 26.4
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 3.7e-41 173.7 145 59.3
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 8.3e-41 172.6 172 49.4
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 3.5e-39 167.2 517 27.7
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 4.7e-36 156.8 484 27.3
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.1e-35 155.6 139 56.8
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.3e-35 154.5 543 26.2
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.0e-30 137.5 433 26.8
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 4.0e-27 127.1 477 23.1
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 3.7e-25 120.6 463 24.4
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.6e-21 105.9 297 31.3
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 2.1e-20 104.8 98 53.1
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 8.1e-20 102.8 68 70.6
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.4e-16 92.0 439 23.7
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 7.8e-15 86.3 226 29.6
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 1.0e-14 85.9 58 65.5
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 2.5e-13 81.3 88 44.3
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 9.6e-13 79.3 193 31.6
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 2.8e-12 77.8 57 57.9
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.4e-11 74.7 83 41.0
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 1.5e-10 72.0 191 24.6
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.1e-08 65.9 134 31.3
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.9e-07 59.7 56 51.8
Dinv07569 Davidia involucrata HOM05D032653 ORTHO05D005678 1.0e-06 59.3 135 28.9
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 2.3e-06 58.2 40 52.5
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 3.0e-06 57.8 101 34.7
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 3.9e-06 57.4 101 34.7


User provided reference genes

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