Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012977 Daucus carota HOM05D006426 ORTHO05D007737 1.9e-188 662.5 372 100.0
Nitab4.5_0001871g0070 Nicotiana tabacum HOM05D006426 ORTHO05D007737 2.1e-75 287.0 485 43.5
CAN.G508.22 Capsicum annuum HOM05D006426 ORTHO05D007737 9.9e-73 278.1 467 43.5
PGSC0003DMG400018371 Solanum tuberosum HOM05D006426 ORTHO05D007737 9.9e-73 278.1 485 43.3
Sopen07g028590 Solanum pennellii HOM05D006426 ORTHO05D007737 3.8e-72 276.2 486 42.2
Solyc07g054690.1 Solanum lycopersicum HOM05D006426 ORTHO05D007737 4.9e-72 275.8 488 42.6
Nitab4.5_0002370g0070 Nicotiana tabacum HOM05D006426 ORTHO05D007737 7.8e-70 268.5 488 42.4
Peaxi162Scf00007g00272 Petunia axillaris HOM05D006426 ORTHO05D007737 2.3e-69 266.9 475 42.5
Cfa014544 Carpinus fangiana HOM05D006426 ORTHO05D007737 2.5e-68 263.5 462 42.0
Haze_13087 Corylus avellana HOM05D006426 ORTHO05D007737 2.1e-67 260.4 466 41.8
QL08p037311 Quercus lobata HOM05D006426 ORTHO05D007737 6.9e-66 255.4 470 41.1
Dinv15495 Davidia involucrata HOM05D006426 ORTHO05D007737 7.6e-65 251.9 478 39.1
Cc05_g06260 Coffea canephora HOM05D006426 ORTHO05D007737 2.9e-64 250.0 493 37.9
TWI36G1326 Tripterygium wilfordii HOM05D006426 ORTHO05D007737 8.4e-64 248.4 467 39.6
TWI18G0136 Tripterygium wilfordii HOM05D006426 ORTHO05D007737 1.1e-63 248.1 459 39.4
TWI75G1119 Tripterygium wilfordii HOM05D006426 ORTHO05D007737 1.4e-63 247.7 465 38.1
Gohir.A03G160000 Gossypium hirsutum HOM05D006426 ORTHO05D007737 2.1e-62 243.8 460 39.6
Prupe.3G231100 Prunus persica HOM05D006426 ORTHO05D007737 4.6e-62 242.7 467 40.3
Potri.013G147500 Populus trichocarpa HOM05D006426 ORTHO05D007737 2.3e-61 240.4 447 39.4
Gohir.D02G183100 Gossypium hirsutum HOM05D006426 ORTHO05D007737 3.0e-61 240.0 460 39.1
Thecc.02G171600 Theobroma cacao HOM05D006426 ORTHO05D007737 3.0e-61 240.0 468 38.5
Potri.019G116200 Populus trichocarpa HOM05D006426 ORTHO05D007737 5.1e-61 239.2 451 39.2
Gorai.005G205500 Gossypium raimondii HOM05D006426 ORTHO05D007737 1.9e-60 237.3 460 39.1
Ciclev10015289m.g Citrus clementina HOM05D006426 ORTHO05D007737 3.3e-60 236.5 443 41.3
Duzib248G1395 Durio zibethinus HOM05D006426 ORTHO05D007737 2.8e-59 233.4 467 38.3
Sabra19G0117200 Salix brachista HOM05D006426 ORTHO05D007737 4.8e-59 232.6 447 37.6
Sabra13G0119100 Salix brachista HOM05D006426 ORTHO05D007737 6.2e-59 232.3 450 38.4
TAR627G1051 Trochodendron aralioides HOM05D006426 ORTHO05D007737 8.1e-59 231.9 460 38.3
COL.COLO4_13683 Corchorus olitorius HOM05D006426 ORTHO05D007737 1.1e-58 231.5 472 37.9
Sabra19G0136500 Salix brachista HOM05D006426 ORTHO05D007737 1.1e-58 231.5 447 37.6
Rhsim06G0152100 Rhododendron simsii HOM05D006426 ORTHO05D007737 1.4e-58 231.1 486 38.7
Actinidia12458 Actinidia chinensis HOM05D006426 ORTHO05D007737 4.0e-58 229.6 471 38.9
FAN02G4384 Fragaria x ananassa HOM05D006426 ORTHO05D007737 4.5e-57 226.1 448 39.3
MD09G1096400 Malus domestica HOM05D006426 ORTHO05D007737 5.8e-57 225.7 467 37.9
Manes.13G151600 Manihot esculenta HOM05D006426 ORTHO05D007737 9.9e-57 224.9 456 38.4
Hma1.2p1_0565F.1_g179550 Hydrangea macrophylla HOM05D006426 ORTHO05D007737 1.3e-56 224.6 442 39.1
MSTRG.14180 Avicennia marina HOM05D006426 ORTHO05D007737 2.2e-56 223.8 486 39.7
Cpa.g.sc34.90 Carica papaya HOM05D006426 ORTHO05D007737 2.9e-56 223.4 464 38.1
FvH4_6g44570 Fragaria vesca HOM05D006426 ORTHO05D007737 2.9e-56 223.4 445 39.8
FAN14G1414 Fragaria x ananassa HOM05D006426 ORTHO05D007737 2.9e-56 223.4 445 39.8
RcHm_v2.0_Chr2g0161781 Rosa chinensis HOM05D006426 ORTHO05D007737 2.9e-56 223.4 449 38.5
Duzib132G0414 Durio zibethinus HOM05D006426 ORTHO05D007737 4.9e-56 222.6 463 37.4
PGR042G3565 Punica granatum HOM05D006426 ORTHO05D007737 4.2e-55 219.5 455 37.6
Lj8P117T60 Lonicera japonica HOM05D006426 ORTHO05D007737 5.5e-55 219.2 279 48.0
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 1.2e-54 218.0 474 37.8
DCAR_009725 Daucus carota HOM05D006426 ORTHO05D007737 1.6e-54 217.6 449 39.2
FAN09G0359 Fragaria x ananassa HOM05D006426 ORTHO05D007737 3.5e-54 216.5 451 38.1
MD17G1084500 Malus domestica HOM05D006426 ORTHO05D007737 4.6e-54 216.1 466 38.2
CiPaw.04G122700 Carya illinoinensis HOM05D006426 ORTHO05D007737 1.0e-53 214.9 459 37.9
Actinidia09902 Actinidia chinensis HOM05D006426 ORTHO05D007737 1.3e-53 214.5 447 37.8
Oeu025481.1 Olea europaea HOM05D006426 ORTHO05D007737 3.0e-53 213.4 509 35.2
Manes.12G083000 Manihot esculenta HOM05D006426 ORTHO05D007737 5.6e-52 209.1 451 35.7
Oeu018075.1 Olea europaea HOM05D006426 ORTHO05D007737 7.4e-52 208.8 478 36.6
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 1.8e-50 204.1 478 37.7
Nn1g03877 Nelumbo nucifera HOM05D006426 ORTHO05D007737 2.6e-49 200.3 473 34.7
EL10Ac9g20938 Beta vulgaris HOM05D006426 ORTHO05D007737 4.5e-49 199.5 485 35.1
unitig_52.g17339 Utricularia gibba HOM05D006426 ORTHO05D007737 2.2e-48 197.2 446 36.5
HanXRQChr15g0488091 Helianthus annuus HOM05D006426 ORTHO05D007737 4.9e-48 196.1 399 39.1
TAR626G1919 Trochodendron aralioides HOM05D006426 ORTHO05D007737 1.9e-47 194.1 448 35.7
Migut.H01020 Erythranthe guttata HOM05D006426 ORTHO05D007737 3.2e-47 193.4 483 36.4
THA.LOC104804065 Tarenaya hassleriana HOM05D006426 ORTHO05D007737 3.9e-45 186.4 422 35.3
ClCG02G017320 Citrullus lanatus HOM05D006426 ORTHO05D007737 1.9e-44 184.1 467 34.9
Eucgr.A01776 Eucalyptus grandis HOM05D006426 ORTHO05D007737 3.3e-44 183.3 252 44.8
Aqoxy1G03895 Aquilegia oxysepala HOM05D006426 ORTHO05D007737 4.3e-44 183.0 249 46.2
MELO3C013535.2 Cucumis melo HOM05D006426 ORTHO05D007737 9.7e-44 181.8 464 33.6
BcaNung01587 Brassica carinata HOM05D006426 ORTHO05D007737 1.6e-43 181.0 388 38.4
A01p19640 Brassica napus HOM05D006426 ORTHO05D007737 1.6e-43 181.0 397 37.0
CARHR235940 Cardamine hirsuta HOM05D006426 ORTHO05D007737 6.3e-43 179.1 421 34.4
SGA_v2.0_scaffold49G18304 Striga asiatica HOM05D006426 ORTHO05D007737 1.8e-42 177.6 467 36.0
Aa31LG2G22090 Aethionema arabicum HOM05D006426 ORTHO05D007737 4.1e-42 176.4 403 35.0
PSO832G1174 Papaver somniferum HOM05D006426 ORTHO05D007737 4.1e-42 176.4 440 35.9
Sc06g0009150 Simmondsia chinensis HOM05D006426 ORTHO05D007737 5.3e-42 176.0 460 33.3
PSO210G4394 Papaver somniferum HOM05D006426 ORTHO05D007737 9.0e-42 175.3 440 35.0
CsaV3_6G012420 Cucumis sativus L. HOM05D006426 ORTHO05D007737 1.2e-41 174.9 466 33.0
AL7G24370 Arabidopsis lyrata HOM05D006426 ORTHO05D007737 1.5e-41 174.5 388 35.6
AT4G28230 Arabidopsis thaliana HOM05D006426 ORTHO05D007737 2.0e-41 174.1 387 36.2
Thhalv10025277m.g Eutrema salsugineum HOM05D006426 ORTHO05D007737 3.4e-41 173.3 429 34.0
Sed0007067 Sechium edule HOM05D006426 ORTHO05D007737 3.4e-41 173.3 454 33.9
TAR629G2656 Trochodendron aralioides HOM05D006426 ORTHO05D007737 3.4e-41 173.3 422 36.0
BraA01t01897Z Brassica rapa HOM05D006426 ORTHO05D007737 1.7e-40 171.0 395 35.7
SalBow1G4632 Salvia bowleyana HOM05D006426 ORTHO05D007737 1.7e-40 171.0 461 35.4
arahy.Tifrunner.gnm1.ann1.2866YZ Arachis hypogaea HOM05D006426 ORTHO05D007737 8.5e-40 168.7 458 32.5
arahy.Tifrunner.gnm1.ann1.512YGT Arachis hypogaea HOM05D006426 ORTHO05D007737 8.5e-40 168.7 459 32.5
Carub.0007s1253 Capsella rubella HOM05D006426 ORTHO05D007737 1.4e-39 167.9 407 35.9
C01p24670 Brassica napus HOM05D006426 ORTHO05D007737 1.8e-37 161.0 395 34.4
BolC1t02416H Brassica oleracea HOM05D006426 ORTHO05D007737 5.1e-37 159.5 395 34.2
Sp7g26190 Schrenkiella parvula HOM05D006426 ORTHO05D007737 6.7e-37 159.1 442 33.3
ECA232G2383 Erigeron canadensis HOM05D006426 ORTHO05D007737 2.8e-35 153.7 443 32.7
BcaC09g50504 Brassica carinata HOM05D006426 ORTHO05D007737 6.3e-35 152.5 397 33.2
SGA_v2.0_scaffold159G37625 Striga asiatica HOM05D006426 ORTHO05D007737 8.2e-35 152.1 379 35.4
Lsat_1_v5_gn_4_69460 Lactuca sativa HOM05D006426 ORTHO05D007737 4.5e-33 146.4 438 33.1
VMungo1080G0900 Vigna mungo HOM05D006426 ORTHO05D007737 2.9e-32 143.7 399 31.3
Phvul.005G017100 Phaseolus vulgaris HOM05D006426 ORTHO05D007737 3.8e-32 143.3 396 32.3
Lalb_Chr01g0017281 Lupinus albus HOM05D006426 ORTHO05D007737 6.5e-32 142.5 415 31.6
PSO675G8522 Papaver somniferum HOM05D006426 ORTHO05D007737 3.2e-31 140.2 482 32.0
PSO541G1576 Papaver somniferum HOM05D006426 ORTHO05D007737 7.2e-31 139.0 482 31.1
Glyma.04G132700 Glycine max HOM05D006426 ORTHO05D007737 3.9e-29 133.3 403 33.5
Lj1P736T39 Lonicera japonica HOM05D006426 ORTHO05D007737 2.0e-28 131.0 173 49.1
Lj3g0000273 Lotus japonicus HOM05D006426 ORTHO05D007737 1.3e-27 128.3 441 32.0
MBI18_g45419_MAGBIO Magnolia biondii HOM05D006426 ORTHO05D007737 1.4e-26 124.8 467 29.8
Glyma.11G158800 Glycine max HOM05D006426 ORTHO05D007737 3.1e-26 123.6 411 30.7
FvH4_6g44594 Fragaria vesca HOM05D006426 ORTHO05D007737 2.9e-24 117.1 172 42.4
Atru.chr6.3076 Acer truncatum HOM05D006426 ORTHO05D007737 5.2e-21 106.3 313 33.5
unitig_62.g23190 Utricularia gibba HOM05D006426 ORTHO05D007737 8.8e-21 105.5 163 38.7
ATR0693G210 Amborella trichopoda HOM05D006426 ORTHO05D007737 5.7e-20 102.8 290 34.5
Ca_18074_v3 Cicer arietinum L. HOM05D006426 ORTHO05D007737 5.7e-20 102.8 382 32.7
Sed0009175 Sechium edule HOM05D006426 ORTHO05D007737 5.7e-20 102.8 348 30.2
TPR.G1458 Trifolium pratense HOM05D006426 ORTHO05D007737 8.2e-19 99.0 411 29.9
Psat5g223040 Pisum sativum HOM05D006426 ORTHO05D007737 3.5e-17 93.6 230 37.4
Medtr3g013540 Medicago truncatula HOM05D006426 ORTHO05D007737 2.1e-14 84.3 412 28.9
CDE10G0475 Ceratophyllum demersum HOM05D006426 ORTHO05D007737 2.0e-12 77.8 468 24.1
HPP92_011117 Vanilla planifolia HOM05D006426 ORTHO05D007737 2.7e-09 67.4 238 28.2
Atru.chr6.3075 Acer truncatum HOM05D006426 ORTHO05D007737 7.2e-07 59.3 69 43.5


User provided reference genes

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