Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 2.9e-44 181.4 86 100.0
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 5.7e-16 87.4 72 56.9
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 3.1e-14 81.6 67 52.2
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 2.7e-13 78.6 51 60.8
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.7e-13 78.6 56 55.4
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 4.5e-13 77.8 69 52.2
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 5.9e-13 77.4 69 53.6
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.7e-13 77.0 67 52.2
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.7e-13 77.0 67 52.2
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 2.3e-12 75.5 53 58.5
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 2.3e-12 75.5 62 48.4
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 2.9e-12 75.1 61 55.7
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 2.9e-12 75.1 62 54.8
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.0e-12 74.3 54 55.6
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 5.0e-12 74.3 54 55.6
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 5.0e-12 74.3 51 60.8
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 5.0e-12 74.3 72 45.8
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 6.6e-12 73.9 53 52.8
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 6.6e-12 73.9 62 48.4
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 6.6e-12 73.9 70 47.1
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.6e-12 73.9 73 42.5
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.6e-12 73.9 54 55.6
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.6e-12 73.9 54 55.6
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 8.6e-12 73.6 52 59.6
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 8.6e-12 73.6 54 55.6
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.1e-11 73.2 51 56.9
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 1.1e-11 73.2 65 52.3
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.5e-11 72.8 50 56.0
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-11 72.8 51 58.8
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-11 72.8 54 50.0
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 1.5e-11 72.8 54 55.6
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 1.5e-11 72.8 54 50.0
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.9e-11 72.4 59 52.5
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.9e-11 72.4 54 53.7
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.9e-11 72.4 59 52.5
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.3e-11 71.6 51 56.9
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.3e-11 71.6 73 41.1
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.3e-11 71.6 54 50.0
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 4.2e-11 71.2 54 59.3
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.2e-11 71.2 55 49.1
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 4.2e-11 71.2 50 56.0
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 5.5e-11 70.9 52 55.8
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 5.5e-11 70.9 52 55.8
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 7.2e-11 70.5 50 52.0
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 7.2e-11 70.5 53 52.8
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.5e-11 70.1 66 43.9
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 9.5e-11 70.1 52 51.9
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 9.5e-11 70.1 50 54.0
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.5e-11 70.1 52 53.8
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.2e-10 69.7 50 56.0
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.2e-10 69.7 53 50.9
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.2e-10 69.7 50 54.0
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.2e-10 69.7 52 51.9
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-10 69.7 51 54.9
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 1.2e-10 69.7 75 42.7
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.6e-10 69.3 54 48.1
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.6e-10 69.3 51 51.0
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.6e-10 69.3 51 51.0
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 1.6e-10 69.3 54 50.0
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 1.6e-10 69.3 54 46.3
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-10 69.3 81 40.7
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-10 69.3 54 50.0
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.6e-10 69.3 52 46.2
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 1.6e-10 69.3 53 49.1
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.1e-10 68.9 50 52.0
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 2.1e-10 68.9 54 50.0
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 2.1e-10 68.9 52 53.8
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.8e-10 68.6 53 50.9
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.8e-10 68.6 53 50.9
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.8e-10 68.6 52 51.9
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 3.6e-10 68.2 62 46.8
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 3.6e-10 68.2 59 45.8
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 3.6e-10 68.2 51 51.0
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.6e-10 68.2 54 50.0
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.7e-10 67.8 77 42.9
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.7e-10 67.8 55 49.1
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 4.7e-10 67.8 53 56.6
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 4.7e-10 67.8 62 50.0
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 4.7e-10 67.8 51 54.9
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 6.1e-10 67.4 52 51.9
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.1e-10 67.4 57 45.6
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.1e-10 67.4 55 47.3
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 8.0e-10 67.0 49 55.1
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 8.0e-10 67.0 51 52.9
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 8.0e-10 67.0 54 48.1
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 1.0e-09 66.6 52 50.0
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 1.0e-09 66.6 54 46.3
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.0e-09 66.6 55 43.6
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.0e-09 66.6 54 48.1
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.4e-09 66.2 64 45.3
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.4e-09 66.2 53 49.1
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.8e-09 65.9 54 44.4
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.8e-09 65.9 58 44.8
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.3e-09 65.5 52 51.9
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 2.3e-09 65.5 54 48.1
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 3.0e-09 65.1 58 46.6
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.0e-09 65.1 63 42.9
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-09 65.1 63 44.4
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 3.0e-09 65.1 53 47.2
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 3.0e-09 65.1 52 51.9
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 4.0e-09 64.7 54 44.4
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.0e-09 64.7 54 44.4
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 5.2e-09 64.3 54 48.1
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.2e-09 64.3 51 49.0
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.2e-09 64.3 51 49.0
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 5.2e-09 64.3 58 43.1
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 5.2e-09 64.3 52 46.2
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 6.8e-09 63.9 53 43.4
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.8e-09 63.9 52 46.2
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 6.8e-09 63.9 60 43.3
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 8.9e-09 63.5 54 44.4
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 8.9e-09 63.5 53 43.4
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 8.9e-09 63.5 55 47.3
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.2e-08 63.2 57 47.4
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.2e-08 63.2 57 45.6
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.2e-08 63.2 70 40.0
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.2e-08 63.2 70 40.0
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-08 62.8 50 48.0
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-08 62.8 50 48.0
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 1.5e-08 62.8 53 43.4
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 2.0e-08 62.4 53 45.3
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.0e-08 62.4 51 47.1
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.0e-08 62.4 52 44.2
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 2.6e-08 62.0 54 42.6
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 3.4e-08 61.6 58 39.7
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.4e-08 61.6 50 48.0
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.4e-08 61.6 54 42.6
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 3.4e-08 61.6 50 52.0
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.4e-08 61.6 48 45.8
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 4.4e-08 61.2 62 38.7
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 4.4e-08 61.2 50 52.0
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 5.7e-08 60.8 50 46.0
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 5.7e-08 60.8 50 44.0
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 5.7e-08 60.8 50 44.0
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 5.7e-08 60.8 50 46.0
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 5.7e-08 60.8 52 44.2
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 5.7e-08 60.8 52 44.2
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 5.7e-08 60.8 66 34.8
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.7e-08 60.8 53 45.3
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 7.5e-08 60.5 63 38.1
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 7.5e-08 60.5 50 44.0
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 7.5e-08 60.5 59 44.1
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.5e-08 60.5 59 44.1
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 9.8e-08 60.1 50 52.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-07 59.7 50 52.0
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-07 59.7 50 52.0
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 1.3e-07 59.7 66 31.8
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 1.7e-07 59.3 50 48.0
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 1.7e-07 59.3 50 44.0
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.7e-07 59.3 51 45.1
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 2.2e-07 58.9 52 42.3
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 2.2e-07 58.9 52 42.3
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 2.8e-07 58.5 68 35.3
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.8e-07 58.5 59 42.4
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.8e-07 58.5 53 45.3
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 2.8e-07 58.5 50 46.0
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 3.7e-07 58.2 50 40.0
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 3.7e-07 58.2 50 42.0
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 3.7e-07 58.2 52 42.3
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 4.9e-07 57.8 54 38.9
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 6.3e-07 57.4 50 40.0
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 6.3e-07 57.4 50 44.0
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 6.3e-07 57.4 53 41.5
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 6.3e-07 57.4 66 33.3
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 6.3e-07 57.4 52 38.5
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.1e-06 56.6 52 40.4
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 1.1e-06 56.6 43 53.5
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 1.1e-06 56.6 52 40.4
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-06 55.5 47 46.8
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.4e-06 55.5 47 46.8
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.4e-06 55.5 51 45.1
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 4.1e-06 54.7 50 52.0
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.1e-06 54.7 50 52.0
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 4.1e-06 54.7 66 31.8
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 7.0e-06 53.9 58 41.4
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 9.2e-06 53.5 52 38.5


User provided reference genes

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