Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 1.1e-159 566.6 293 100.0
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.6e-113 413.3 300 73.3
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 2.0e-113 412.9 298 71.8
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 2.0e-113 412.9 300 73.0
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 2.6e-113 412.5 295 74.9
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 2.6e-113 412.5 297 73.4
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 5.9e-113 411.4 300 72.7
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 7.7e-113 411.0 293 73.4
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 7.7e-113 411.0 297 72.1
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 7.7e-113 411.0 297 72.1
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 2.9e-112 409.1 301 73.1
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 3.8e-112 408.7 297 74.4
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 8.5e-112 407.5 293 73.0
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 8.5e-112 407.5 293 73.0
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 2.5e-111 406.0 234 89.7
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 9.4e-111 404.1 293 72.7
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.2e-110 403.7 296 73.0
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 3.6e-110 402.1 296 70.6
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 4.7e-110 401.7 299 72.2
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 6.1e-110 401.4 298 71.5
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 1.0e-109 400.6 297 71.0
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 1.8e-109 399.8 296 72.3
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.8e-109 399.8 297 71.7
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 6.7e-109 397.9 297 69.7
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.2e-108 397.1 299 70.6
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 2.0e-108 396.4 299 70.2
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 5.7e-108 394.8 307 68.7
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 9.7e-108 394.0 299 71.9
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 1.3e-107 393.7 298 69.1
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.7e-107 393.3 298 69.1
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 2.2e-107 392.9 297 71.4
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 3.7e-107 392.1 299 69.6
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.8e-106 389.8 299 70.9
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 2.4e-106 389.4 292 69.2
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 4.1e-106 388.7 301 68.8
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 4.1e-106 388.7 301 69.1
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 4.1e-106 388.7 318 66.4
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 5.3e-106 388.3 296 69.3
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 5.3e-106 388.3 241 81.7
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 9.1e-106 387.5 300 70.3
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 1.2e-105 387.1 295 69.5
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.2e-105 387.1 298 67.8
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-105 387.1 299 68.9
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-105 387.1 299 68.9
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 1.6e-105 386.7 295 69.8
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 1.6e-105 386.7 289 70.9
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 2.0e-105 386.3 330 66.7
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.7e-105 386.0 299 68.2
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 3.5e-105 385.6 305 70.2
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 5.9e-105 384.8 301 67.8
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 5.9e-105 384.8 295 69.5
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.0e-104 384.0 293 70.3
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 2.2e-104 382.9 300 69.0
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 2.2e-104 382.9 292 70.5
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 2.2e-104 382.9 293 69.3
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 6.5e-104 381.3 296 69.3
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 6.5e-104 381.3 294 69.4
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 6.5e-104 381.3 297 67.3
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 1.5e-103 380.2 294 69.4
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 1.9e-103 379.8 294 69.4
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 4.2e-103 378.6 293 68.6
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 4.2e-103 378.6 297 67.7
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 5.5e-103 378.3 297 66.7
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 1.2e-102 377.1 292 69.9
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.7e-102 375.9 302 68.9
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 2.7e-102 375.9 294 68.7
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 3.6e-102 375.6 294 68.4
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 6.1e-102 374.8 289 70.6
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 6.1e-102 374.8 292 68.8
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 6.1e-102 374.8 296 67.6
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 1.0e-101 374.0 289 68.2
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 1.0e-101 374.0 289 68.2
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 1.4e-101 373.6 289 70.2
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 1.4e-101 373.6 300 68.0
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 2.3e-101 372.9 291 67.0
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 4.0e-101 372.1 291 68.7
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 5.2e-101 371.7 289 67.8
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 6.8e-101 371.3 295 67.1
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 6.8e-101 371.3 291 67.0
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 8.8e-101 370.9 295 67.8
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 8.8e-101 370.9 298 67.1
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 8.8e-101 370.9 299 67.9
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 1.5e-100 370.2 296 67.9
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 2.0e-100 369.8 291 68.0
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 2.0e-100 369.8 291 68.0
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 2.0e-100 369.8 284 69.4
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 3.4e-100 369.0 292 68.5
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 4.4e-100 368.6 288 69.4
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 5.7e-100 368.2 289 67.8
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 7.5e-100 367.9 287 66.9
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 7.5e-100 367.9 286 66.8
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.7e-99 366.7 294 66.0
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.7e-99 366.7 289 69.6
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.7e-99 366.7 292 67.8
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 1.7e-99 366.7 353 59.8
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 2.2e-99 366.3 290 68.3
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 3.7e-99 365.5 287 69.0
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 8.3e-99 364.4 293 67.6
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 1.1e-98 364.0 272 72.1
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 1.4e-98 363.6 286 67.8
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 1.8e-98 363.2 288 66.3
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 4.1e-98 362.1 283 67.1
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 9.1e-98 360.9 297 66.0
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.2e-97 360.5 281 68.7
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.2e-97 360.5 281 68.7
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 1.6e-97 360.1 287 67.6
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 4.5e-97 358.6 286 68.2
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 4.5e-97 358.6 291 65.6
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 5.9e-97 358.2 293 66.6
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 1.3e-96 357.1 246 75.6
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 2.3e-96 356.3 246 72.4
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 5.0e-96 355.1 345 58.3
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 6.6e-96 354.8 310 62.6
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 1.5e-95 353.6 355 58.0
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 1.5e-95 353.6 286 67.5
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 5.5e-95 351.7 271 68.6
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 7.2e-95 351.3 286 66.1
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 2.1e-94 349.7 344 57.6
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 6.1e-94 348.2 295 61.4
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 6.3e-91 338.2 229 74.7
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 3.1e-90 335.9 329 59.3
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.3e-88 330.5 266 65.8
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 1.7e-88 330.1 233 75.1
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 2.9e-88 329.3 292 61.6
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 5.0e-88 328.6 225 74.2
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.1e-87 327.4 297 62.6
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 8.9e-85 317.8 298 60.4
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.1e-82 310.8 200 78.5
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.9e-80 302.4 299 57.9
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.5e-79 300.4 220 71.4
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 4.7e-78 295.4 230 63.9
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 2.0e-76 290.0 201 70.6
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.3e-75 287.3 225 64.9
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 8.3e-75 284.6 295 55.3
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 1.9e-74 283.5 225 63.1
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 1.2e-73 280.8 227 65.2
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 2.1e-73 280.0 187 75.9
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.3e-72 277.3 230 65.7
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 6.6e-72 275.0 259 59.8
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 4.3e-71 272.3 265 58.9
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 2.8e-62 243.0 187 70.1
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 1.7e-56 223.8 200 62.5
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 3.9e-56 222.6 236 49.2
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 2.8e-54 216.5 216 50.0
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 4.4e-52 209.1 187 59.4
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.6e-49 200.7 150 65.3
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 1.9e-47 193.7 258 43.4
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 8.1e-38 161.8 271 37.3
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.9e-34 150.6 159 51.6
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.8e-22 110.2 64 84.4
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 4.8e-22 109.4 69 78.3
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 1.4e-21 107.8 281 34.5
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 2.6e-20 103.6 59 88.1
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 6.3e-14 82.4 119 44.5
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 3.2e-10 70.1 43 72.1
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 2.7e-09 67.0 56 64.3


User provided reference genes

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