Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.6e-52 209.1 103 100.0
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 2.2e-38 162.2 109 74.3
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 1.3e-35 152.9 103 68.9
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 3.3e-34 148.3 103 68.9
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.4e-32 142.9 108 67.6
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 1.8e-32 142.5 107 65.4
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 5.2e-32 141.0 110 63.6
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.3e-30 136.3 110 62.7
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 1.3e-30 136.3 108 63.9
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.7e-30 136.0 111 67.6
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.9e-30 135.2 109 63.3
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.9e-30 135.2 109 63.3
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.9e-30 135.2 109 63.3
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.7e-30 134.8 108 63.9
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 3.7e-30 134.8 109 64.2
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 6.4e-30 134.0 108 64.8
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.4e-29 132.9 111 62.2
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 2.4e-29 132.1 108 67.6
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 3.2e-29 131.7 108 61.1
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 2.1e-28 129.0 103 62.1
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.7e-28 128.6 102 63.7
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.7e-28 128.6 102 63.7
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 6.0e-28 127.5 111 60.4
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 7.8e-28 127.1 110 61.8
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.0e-27 126.7 110 61.8
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.7e-27 125.9 101 61.4
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 2.3e-27 125.6 107 58.9
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 3.0e-27 125.2 108 60.2
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 3.0e-27 125.2 107 58.9
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 5.1e-27 124.4 90 70.0
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 5.1e-27 124.4 108 59.3
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 5.1e-27 124.4 111 61.3
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 8.6e-27 123.6 110 62.7
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 8.6e-27 123.6 100 61.0
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 8.6e-27 123.6 111 58.6
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 8.6e-27 123.6 106 55.7
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.1e-26 123.2 89 64.0
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.5e-26 122.9 88 63.6
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 3.3e-26 121.7 122 57.4
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 5.6e-26 120.9 112 58.0
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 5.6e-26 120.9 109 56.9
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 7.3e-26 120.6 108 64.8
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 2.1e-25 119.0 104 62.5
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 2.8e-25 118.6 104 55.8
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.2e-25 117.5 112 55.4
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.2e-25 117.5 112 55.4
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 6.2e-25 117.5 93 64.5
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 6.2e-25 117.5 109 55.0
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.1e-24 116.7 109 55.0
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.1e-24 116.7 108 57.4
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.4e-24 116.3 110 54.5
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.4e-24 116.3 115 60.0
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.8e-24 115.9 103 55.3
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 4.0e-24 114.8 105 61.0
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 5.2e-24 114.4 108 57.4
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 8.9e-24 113.6 108 60.2
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 8.9e-24 113.6 108 60.2
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 8.9e-24 113.6 109 56.9
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 8.9e-24 113.6 99 59.6
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.5e-23 112.8 107 58.9
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 1.5e-23 112.8 112 51.8
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.5e-23 112.8 108 55.6
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.5e-23 112.8 106 55.7
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 2.6e-23 112.1 107 61.7
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.4e-23 111.7 107 57.9
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 3.4e-23 111.7 108 56.5
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 5.8e-23 110.9 107 51.4
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.8e-23 110.9 105 58.1
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 5.8e-23 110.9 107 55.1
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 7.6e-23 110.5 108 54.6
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 7.6e-23 110.5 108 54.6
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.7e-22 109.4 108 56.5
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 2.9e-22 108.6 96 57.3
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.8e-22 108.2 108 57.4
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 8.4e-22 107.1 109 55.0
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 8.4e-22 107.1 97 54.6
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 1.1e-21 106.7 89 58.4
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 1.4e-21 106.3 99 59.6
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.9e-21 105.9 114 55.3
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 4.2e-21 104.8 107 56.1
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 4.2e-21 104.8 105 54.3
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 4.2e-21 104.8 105 54.3
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 7.1e-21 104.0 96 54.2
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.2e-20 103.2 105 53.3
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.2e-20 103.2 109 51.4
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.6e-20 102.8 105 53.3
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 1.6e-20 102.8 63 76.2
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 4.6e-20 101.3 123 52.0
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 6.0e-20 100.9 123 51.2
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 6.0e-20 100.9 104 56.7
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 7.8e-20 100.5 105 50.5
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 1.0e-19 100.1 105 52.4
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.0e-19 100.1 108 50.9
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.3e-19 99.8 113 47.8
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.7e-19 99.4 109 53.2
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.7e-19 99.4 103 54.4
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.9e-19 98.2 103 49.5
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 3.9e-19 98.2 80 57.5
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 5.1e-19 97.8 109 51.4
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.1e-18 96.7 108 49.1
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 3.3e-18 95.1 92 51.1
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 7.3e-18 94.0 109 47.7
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.3e-17 93.2 103 51.5
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.3e-17 93.2 103 51.5
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.6e-17 92.8 91 51.6
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.6e-17 92.8 96 58.3
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.6e-17 92.8 103 50.5
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 2.1e-17 92.4 115 48.7
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.1e-17 92.4 104 51.0
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 4.8e-17 91.3 103 50.5
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 8.1e-17 90.5 110 49.1
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.1e-16 90.1 109 50.5
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.1e-16 90.1 99 50.5
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.4e-16 89.7 103 49.5
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.4e-16 89.7 109 45.9
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 1.8e-16 89.4 116 43.1
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 4.0e-16 88.2 93 50.5
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 4.0e-16 88.2 103 48.5
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 4.0e-16 88.2 103 48.5
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 4.0e-16 88.2 112 51.8
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 9.0e-16 87.0 108 46.3
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.2e-15 86.7 96 52.1
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.0e-15 85.9 116 44.0
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.6e-15 85.5 103 47.6
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.6e-15 85.5 116 44.0
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.6e-15 85.5 114 43.9
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 2.6e-15 85.5 114 44.7
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 3.4e-15 85.1 88 48.9
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 4.9e-14 81.3 97 49.5
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 8.4e-14 80.5 99 52.5
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 1.4e-13 79.7 53 60.4
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.9e-13 79.3 104 41.3
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 3.2e-13 78.6 103 49.5
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 3.5e-12 75.1 89 50.6
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 6.0e-12 74.3 99 43.4
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 6.0e-12 74.3 110 40.0
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.0e-11 73.6 108 44.4
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 1.0e-11 73.6 75 49.3
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.3e-11 72.4 107 41.1
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 3.0e-11 72.0 107 38.3
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 8.7e-11 70.5 107 43.0
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 8.1e-09 63.9 89 43.8
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 1.1e-08 63.5 106 39.6
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 1.2e-07 60.1 101 42.6
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 2.0e-07 59.3 104 39.4
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 9.9e-07 57.0 86 44.2


User provided reference genes

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