Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012893 Daucus carota HOM05D005849 ORTHO05D004704 1.7e-94 349.4 179 100.0
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 8.8e-27 124.4 194 42.8
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 1.8e-24 116.7 194 41.8
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 2.6e-23 112.8 182 45.1
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 3.5e-23 112.5 182 42.3
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 3.5e-23 112.5 182 42.3
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 5.9e-23 111.7 182 42.3
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 7.7e-23 111.3 190 41.1
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 7.7e-23 111.3 124 54.0
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 1.3e-22 110.5 186 45.2
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 1.7e-22 110.2 192 42.2
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 2.2e-22 109.8 188 43.1
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 3.8e-22 109.0 147 53.7
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 6.5e-22 108.2 151 48.3
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 2.5e-21 106.3 182 40.7
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 7.2e-21 104.8 188 44.7
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 9.4e-21 104.4 208 40.4
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 9.4e-21 104.4 189 40.7
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 2.1e-20 103.2 134 49.3
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 2.7e-20 102.8 194 38.1
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 4.0e-19 99.0 175 42.3
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 6.8e-19 98.2 148 45.3
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 8.8e-19 97.8 125 50.4
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.0e-18 96.7 175 43.4
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.0e-18 96.7 175 41.7
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 3.4e-18 95.9 111 54.1
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 5.7e-18 95.1 152 41.4
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 7.5e-18 94.7 157 46.5
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 9.8e-18 94.4 184 41.8
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.7e-17 93.6 175 45.1
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 3.7e-17 92.4 141 48.9
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 3.7e-17 92.4 128 50.0
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 3.7e-17 92.4 128 50.0
PSO541G2883 Papaver somniferum HOM05D005849 ORTHO05D004704 8.3e-17 91.3 158 43.7
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 1.4e-16 90.5 164 46.3
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 1.4e-16 90.5 193 40.9
PSO675G3647 Papaver somniferum HOM05D005849 ORTHO05D004704 1.4e-16 90.5 157 43.3
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 2.4e-16 89.7 117 53.8
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 4.1e-16 89.0 194 41.2
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 4.1e-16 89.0 157 43.3
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 4.1e-16 89.0 190 36.8
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 4.1e-16 89.0 130 47.7
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 5.4e-16 88.6 189 38.6
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 9.1e-16 87.8 163 41.7
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.6e-15 87.0 186 41.9
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.7e-15 86.3 186 40.3
LjContig00081g0015024 Lotus japonicus HOM05D005849 ORTHO05D004704 3.5e-15 85.9 185 40.0
Duzib213G0789 Durio zibethinus HOM05D005849 ORTHO05D004704 4.5e-15 85.5 175 36.6
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 7.7e-15 84.7 124 48.4
MSTRG.12249 Avicennia marina HOM05D005849 ORTHO05D004704 1.0e-14 84.3 127 50.4
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 1.3e-14 84.0 171 41.5
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 1.7e-14 83.6 116 50.0
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 1.7e-14 83.6 192 37.0
Sc20g0004000 Simmondsia chinensis HOM05D005849 ORTHO05D004704 1.7e-14 83.6 116 50.9
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 3.8e-14 82.4 134 47.0
Lalb_Chr10g0107651 Lupinus albus HOM05D005849 ORTHO05D004704 1.1e-13 80.9 180 42.2
Lj1P796T11 Lonicera japonica HOM05D005849 ORTHO05D004704 1.5e-13 80.5 130 46.2
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 2.5e-13 79.7 120 46.7
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 5.5e-13 78.6 167 37.7
VMungo0540G2501 Vigna mungo HOM05D005849 ORTHO05D004704 5.5e-13 78.6 127 44.9
Lsat_1_v5_gn_9_103781 Lactuca sativa HOM05D005849 ORTHO05D004704 7.2e-13 78.2 183 38.3
Ca_06483_v3 Cicer arietinum L. HOM05D005849 ORTHO05D004704 1.2e-12 77.4 127 44.9
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 1.2e-12 77.4 132 45.5
Phvul.007G121090 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 1.2e-12 77.4 156 42.9
Sed0012118 Sechium edule HOM05D005849 ORTHO05D004704 1.6e-12 77.0 132 47.0
Sed0027972 Sechium edule HOM05D005849 ORTHO05D004704 1.6e-12 77.0 118 46.6
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 3.6e-12 75.9 128 48.4
EL10Ac9g22679 Beta vulgaris HOM05D005849 ORTHO05D004704 6.1e-12 75.1 163 38.0
Glyma.13G006500 Glycine max HOM05D005849 ORTHO05D004704 6.1e-12 75.1 208 36.1
Nitab4.5_0000006g0660 Nicotiana tabacum HOM05D005849 ORTHO05D004704 6.1e-12 75.1 184 37.0
Oeu064351.1 Olea europaea HOM05D005849 ORTHO05D004704 6.1e-12 75.1 131 45.0
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 2.3e-11 73.2 132 44.7
AUR62015005 Chenopodium quinoa HOM05D005849 ORTHO05D004704 4.0e-11 72.4 173 37.6
TWI38G0138 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 5.2e-11 72.0 192 33.3
AUR62029117 Chenopodium quinoa HOM05D005849 ORTHO05D004704 6.8e-11 71.6 121 40.5
Actinidia35203 Actinidia chinensis HOM05D005849 ORTHO05D004704 1.2e-10 70.9 149 40.9
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 1.2e-10 70.9 86 57.0
Prupe.4G242400 Prunus persica HOM05D005849 ORTHO05D004704 1.2e-10 70.9 120 44.2
CiPaw.11G203200 Carya illinoinensis HOM05D005849 ORTHO05D004704 5.7e-10 68.6 120 41.7
Peaxi162Scf00802g00130 Petunia axillaris HOM05D005849 ORTHO05D004704 5.7e-10 68.6 82 56.1
Ciclev10009298m.g Citrus clementina HOM05D005849 ORTHO05D004704 9.8e-10 67.8 186 36.0
THA.LOC104808845 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 9.8e-10 67.8 95 49.5
Sabra16G0240400 Salix brachista HOM05D005849 ORTHO05D004704 1.7e-09 67.0 196 32.7
Thecc.07G014700 Theobroma cacao HOM05D005849 ORTHO05D004704 1.7e-09 67.0 189 31.2
Dinv21298 Davidia involucrata HOM05D005849 ORTHO05D004704 2.8e-09 66.2 145 40.7
Gohir.A01G091100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 3.7e-09 65.9 129 38.0
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 3.7e-09 65.9 86 50.0
Potri.001G367100 Populus trichocarpa HOM05D005849 ORTHO05D004704 3.7e-09 65.9 187 33.7
ECA240G3450 Erigeron canadensis HOM05D005849 ORTHO05D004704 4.9e-09 65.5 120 39.2
Gohir.D01G076400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 8.3e-09 64.7 130 37.7
Ah.01g002540 Amaranthus hybridus HOM05D005849 ORTHO05D004704 1.1e-08 64.3 170 32.9
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 1.1e-08 64.3 134 40.3
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 2.4e-08 63.2 86 50.0
ClCG02G009210 Citrullus lanatus HOM05D005849 ORTHO05D004704 3.1e-08 62.8 128 43.8
arahy.Tifrunner.gnm1.ann1.8Y07GA Arachis hypogaea HOM05D005849 ORTHO05D004704 4.1e-08 62.4 113 43.4
QL08p004345 Quercus lobata HOM05D005849 ORTHO05D004704 4.1e-08 62.4 144 38.2
QL11p054311 Quercus lobata HOM05D005849 ORTHO05D004704 4.1e-08 62.4 144 38.2
arahy.Tifrunner.gnm1.ann1.S46AGL Arachis hypogaea HOM05D005849 ORTHO05D004704 7.0e-08 61.6 118 41.5
Gorai.002G099600 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.2e-07 60.8 130 36.9
Os12g0498900 Oryza sativa ssp. japonica HOM05D005849 ORTHO05D004704 1.2e-07 60.8 159 32.1
Psat2g002880 Pisum sativum HOM05D005849 ORTHO05D004704 1.2e-07 60.8 128 39.1
CARHR216740 Cardamine hirsuta HOM05D009495 ORTHO05D004704 1.6e-07 60.5 126 36.5
Phvul.006G056700 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 1.6e-07 60.5 92 43.5
Cpa.g.sc12.153 Carica papaya HOM05D005849 ORTHO05D004704 3.5e-07 59.3 158 33.5
Carub.0007s3167 Capsella rubella HOM05D009495 ORTHO05D004704 7.7e-07 58.2 113 38.9
BcaC06g35871 Brassica carinata HOM05D009495 ORTHO05D004704 1.0e-06 57.8 86 44.2
C07p10220 Brassica napus HOM05D009495 ORTHO05D004704 1.0e-06 57.8 86 44.2
BolC7t41473H Brassica oleracea HOM05D009495 ORTHO05D004704 1.0e-06 57.8 86 44.2
AL3G42130 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 1.3e-06 57.4 135 34.8
AT5G35870 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 1.3e-06 57.4 144 33.3
Sp3g23270 Schrenkiella parvula HOM05D009495 ORTHO05D004704 1.3e-06 57.4 121 37.2
THA.LOC104815364 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 1.3e-06 57.4 82 45.1
VMungo0540G1302 Vigna mungo HOM05D005849 ORTHO05D004704 1.3e-06 57.4 89 42.7
AL7G44750 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 2.3e-06 56.6 119 37.0
CANSAT11G2057 Cannabis sativa HOM05D005849 ORTHO05D004704 2.9e-06 56.2 199 32.7
A07p06700 Brassica napus HOM05D009495 ORTHO05D004704 3.8e-06 55.8 86 43.0
BraA07t28463Z Brassica rapa HOM05D009495 ORTHO05D004704 5.0e-06 55.5 86 43.0
Thhalv10005712m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 8.6e-06 54.7 89 41.6
Oeu049391.1 Olea europaea HOM05D005849 ORTHO05D004704 8.6e-06 54.7 125 35.2


User provided reference genes

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