Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012821 Daucus carota HOM05D001896 ORTHO05D001862 3.1e-102 375.2 195 100.0
DCAR_008863 Daucus carota HOM05D001896 ORTHO05D001862 1.9e-54 216.5 195 62.1
DCAR_009869 Daucus carota HOM05D001896 ORTHO05D001862 5.8e-32 141.7 194 50.0
DCAR_020055 Daucus carota HOM05D001896 ORTHO05D001862 9.9e-32 141.0 190 48.4
DCAR_009870 Daucus carota HOM05D001896 ORTHO05D001862 7.8e-29 131.3 190 44.2
Hma1.2p1_1170F.1_g263360 Hydrangea macrophylla HOM05D001896 ORTHO05D001862 9.6e-19 97.8 186 38.2
Rhsim06G0063700 Rhododendron simsii HOM05D001896 ORTHO05D001862 3.7e-18 95.9 182 39.6
Lsat_1_v5_gn_1_1181 Lactuca sativa HOM05D001896 ORTHO05D001862 5.3e-17 92.0 187 36.9
Sed0003560 Sechium edule HOM05D001896 ORTHO05D001862 9.9e-16 87.8 190 37.9
ECA247G3779 Erigeron canadensis HOM05D001896 ORTHO05D001862 1.3e-15 87.4 187 36.9
Cfa013755 Carpinus fangiana HOM05D001896 ORTHO05D001862 3.8e-15 85.9 198 38.9
Peaxi162Scf00160g00068 Petunia axillaris HOM05D001896 ORTHO05D001862 3.8e-15 85.9 187 34.2
Lj4C73T24 Lonicera japonica HOM05D001896 ORTHO05D001862 1.4e-14 84.0 192 32.8
Prupe.1G420800 Prunus persica HOM05D001896 ORTHO05D001862 3.2e-14 82.8 191 36.6
Cc10_g05130 Coffea canephora HOM05D001896 ORTHO05D001862 4.2e-14 82.4 191 38.7
Gohir.A05G211200 Gossypium hirsutum HOM05D001896 ORTHO05D001862 4.2e-14 82.4 190 34.2
FvH4_2g32830 Fragaria vesca HOM05D001896 ORTHO05D001862 5.5e-14 82.0 187 39.0
Cpa.g.sc142.51 Carica papaya HOM05D001896 ORTHO05D001862 7.1e-14 81.6 187 36.4
FAN24G0761 Fragaria x ananassa HOM05D000371 ORTHO05D001484 9.3e-14 81.3 187 38.5
CiPaw.08G051100 Carya illinoinensis HOM05D001896 ORTHO05D001862 1.2e-13 80.9 186 38.2
FAN27G2593 Fragaria x ananassa HOM05D000371 ORTHO05D001484 1.2e-13 80.9 187 38.5
Duzib116G0259 Durio zibethinus HOM05D001896 ORTHO05D001862 2.1e-13 80.1 188 33.0
CAN.G975.10 Capsicum annuum HOM05D001896 ORTHO05D001862 3.5e-13 79.3 191 35.6
Gohir.A01G123300 Gossypium hirsutum HOM05D001896 ORTHO05D001862 3.5e-13 79.3 186 34.4
Gorai.009G221200 Gossypium raimondii HOM05D001896 ORTHO05D001862 3.5e-13 79.3 186 34.4
Manes.18G048000 Manihot esculenta HOM05D001896 ORTHO05D001862 4.6e-13 79.0 198 34.8
TPR.G33724 Trifolium pratense HOM05D001896 ORTHO05D001862 4.6e-13 79.0 193 34.2
FAN20G2517 Fragaria x ananassa HOM05D001896 ORTHO05D001862 6.0e-13 78.6 188 37.2
Glyma.04G046800 Glycine max HOM05D001896 ORTHO05D001862 6.0e-13 78.6 193 33.2
Thecc.08G086000 Theobroma cacao HOM05D001896 ORTHO05D001862 6.0e-13 78.6 184 33.2
RcHm_v2.0_Chr6g0309871 Rosa chinensis HOM05D001896 ORTHO05D001862 7.9e-13 78.2 189 37.0
PGSC0003DMG400004940 Solanum tuberosum HOM05D001896 ORTHO05D001862 7.9e-13 78.2 192 35.9
CAN.G1239.2 Capsicum annuum HOM05D001896 ORTHO05D001862 1.0e-12 77.8 191 34.0
Gohir.D05G214500 Gossypium hirsutum HOM05D001896 ORTHO05D001862 1.0e-12 77.8 184 34.2
Atru.chr13.855 Acer truncatum HOM05D001896 ORTHO05D001862 2.3e-12 76.6 195 33.8
Gohir.D01G110900 Gossypium hirsutum HOM05D001896 ORTHO05D001862 2.3e-12 76.6 186 33.3
Gorai.002G135700 Gossypium raimondii HOM05D001896 ORTHO05D001862 2.3e-12 76.6 186 33.3
Oeu053629.1 Olea europaea HOM05D001896 ORTHO05D001862 2.3e-12 76.6 189 35.4
Psat5g038600 Pisum sativum HOM05D001896 ORTHO05D001862 3.0e-12 76.3 193 34.7
QL12p038359 Quercus lobata HOM05D001896 ORTHO05D001862 3.0e-12 76.3 186 37.1
Migut.N02794 Erythranthe guttata HOM05D001896 ORTHO05D001862 3.9e-12 75.9 191 35.1
Prupe.6G218500 Prunus persica HOM05D001896 ORTHO05D001862 3.9e-12 75.9 184 37.5
Duzib093G0976 Durio zibethinus HOM05D001896 ORTHO05D001862 5.1e-12 75.5 187 31.6
Manes.05G182700 Manihot esculenta HOM05D001896 ORTHO05D001862 5.1e-12 75.5 198 32.8
COL.COLO4_11600 Corchorus olitorius HOM05D001896 ORTHO05D001862 8.7e-12 74.7 190 34.2
MELO3C010793.2 Cucumis melo HOM05D001896 ORTHO05D001862 8.7e-12 74.7 190 35.3
CsaV3_2G026000 Cucumis sativus L. HOM05D001896 ORTHO05D001862 8.7e-12 74.7 190 34.2
Nn6g34510 Nelumbo nucifera HOM05D001896 ORTHO05D001862 8.7e-12 74.7 187 32.6
Potri.014G014500 Populus trichocarpa HOM05D001896 ORTHO05D001862 1.1e-11 74.3 191 36.6
CiPaw.07G173200 Carya illinoinensis HOM05D001896 ORTHO05D001862 1.5e-11 73.9 188 35.6
Nitab4.5_0002379g0010 Nicotiana tabacum HOM05D001896 ORTHO05D001862 1.5e-11 73.9 184 33.7
Sopen04g031260 Solanum pennellii HOM05D001896 ORTHO05D001862 1.9e-11 73.6 192 34.9
Oeu048568.1 Olea europaea HOM05D001896 ORTHO05D001862 3.3e-11 72.8 180 35.6
SalBow2G3314 Salvia bowleyana HOM05D001896 ORTHO05D001862 7.4e-11 71.6 188 34.6
CANSAT25G3829 Cannabis sativa HOM05D001896 ORTHO05D001862 9.6e-11 71.2 189 35.4
HanXRQChr10g0292131 Helianthus annuus HOM05D001896 ORTHO05D001862 9.6e-11 71.2 162 34.6
Phvul.009G073000 Phaseolus vulgaris HOM05D001896 ORTHO05D001862 1.3e-10 70.9 196 31.6
EL10Ac1g02360 Beta vulgaris HOM05D001896 ORTHO05D001862 1.6e-10 70.5 201 33.8
AUR62037407 Chenopodium quinoa HOM05D001896 ORTHO05D001862 1.6e-10 70.5 202 32.7
Manes.12G116200 Manihot esculenta HOM05D001896 ORTHO05D001862 1.6e-10 70.5 190 34.2
SalBow2G0839 Salvia bowleyana HOM05D001896 ORTHO05D001862 1.6e-10 70.5 187 34.2
Aa31LG2G10650 Aethionema arabicum HOM05D001896 ORTHO05D001862 2.1e-10 70.1 190 33.7
ClCG08G016610 Citrullus lanatus HOM05D001896 ORTHO05D001862 2.1e-10 70.1 190 32.6
Dinv44941 Davidia involucrata HOM05D001896 ORTHO05D001862 2.1e-10 70.1 187 32.6
THA.LOC104816764 Tarenaya hassleriana HOM05D001896 ORTHO05D001862 2.1e-10 70.1 189 29.6
TAR628G1651 Trochodendron aralioides HOM05D001896 ORTHO05D001862 2.1e-10 70.1 195 34.4
VMungo1309G2110 Vigna mungo HOM05D001896 ORTHO05D001862 2.1e-10 70.1 195 32.3
A06p06790 Brassica napus HOM05D001896 ORTHO05D001862 2.8e-10 69.7 189 31.2
A09p65180 Brassica napus HOM05D001896 ORTHO05D001862 2.8e-10 69.7 183 28.4
BraA06t23894Z Brassica rapa HOM05D001896 ORTHO05D001862 2.8e-10 69.7 189 31.2
Sc15g0005450 Simmondsia chinensis HOM05D001896 ORTHO05D001862 2.8e-10 69.7 195 33.3
Sc15g0005480 Simmondsia chinensis HOM05D001896 ORTHO05D001862 2.8e-10 69.7 195 33.3
GSVIVG01009317001 Vitis vinifera HOM05D001896 ORTHO05D001862 2.8e-10 69.7 186 33.9
Duzib041G0206 Durio zibethinus HOM05D001896 ORTHO05D001862 3.7e-10 69.3 186 32.3
Duzib147G1417 Durio zibethinus HOM05D001896 ORTHO05D001862 3.7e-10 69.3 188 31.4
BolC5t29578H Brassica oleracea HOM05D001896 ORTHO05D001862 4.8e-10 68.9 192 33.3
Medtr3g103290 Medicago truncatula HOM05D001896 ORTHO05D001862 4.8e-10 68.9 193 32.6
BcaC07g41840 Brassica carinata HOM05D001896 ORTHO05D001862 6.2e-10 68.6 183 28.4
C08p49120 Brassica napus HOM05D001896 ORTHO05D001862 6.2e-10 68.6 183 28.4
Carub.0002s0609 Capsella rubella HOM05D001896 ORTHO05D001862 6.2e-10 68.6 198 31.8
Gohir.A02G150400 Gossypium hirsutum HOM05D001896 ORTHO05D001862 6.2e-10 68.6 188 33.0
BcaC05g24808 Brassica carinata HOM05D001896 ORTHO05D001862 8.2e-10 68.2 192 31.8
C05p08280 Brassica napus HOM05D001896 ORTHO05D001862 8.2e-10 68.2 192 31.8
BraA09t41861Z Brassica rapa HOM05D001896 ORTHO05D001862 8.2e-10 68.2 183 28.4
ECA232G4825 Erigeron canadensis HOM05D001896 ORTHO05D001862 8.2e-10 68.2 188 31.4
Thhalv10023719m.g Eutrema salsugineum HOM05D001896 ORTHO05D001862 8.2e-10 68.2 205 31.7
Sabra14G0008700 Salix brachista HOM05D001896 ORTHO05D001862 8.2e-10 68.2 151 35.8
TWI74G0977 Tripterygium wilfordii HOM05D001896 ORTHO05D001862 8.2e-10 68.2 188 31.9
Lj1g0008502 Lotus japonicus HOM05D001896 ORTHO05D001862 1.1e-09 67.8 183 32.2
BolC8t52445H Brassica oleracea HOM05D001896 ORTHO05D001862 1.4e-09 67.4 183 27.9
Glyma.06G047600 Glycine max HOM05D001896 ORTHO05D001862 1.8e-09 67.0 195 29.7
Lalb_Chr08g0245301 Lupinus albus HOM05D001896 ORTHO05D001862 1.8e-09 67.0 189 31.7
Nn5g30636 Nelumbo nucifera HOM05D001896 ORTHO05D001862 1.8e-09 67.0 189 32.3
Thecc.01G074600 Theobroma cacao HOM05D001896 ORTHO05D001862 1.8e-09 67.0 188 31.9
Sp1g08770 Schrenkiella parvula HOM05D001896 ORTHO05D001862 3.1e-09 66.2 189 28.0
Gohir.D03G029900 Gossypium hirsutum HOM05D001896 ORTHO05D001862 4.0e-09 65.9 188 31.4
MD15G1299400 Malus domestica HOM05D001896 ORTHO05D001862 4.0e-09 65.9 183 33.9
Potri.014G014600 Populus trichocarpa HOM05D001896 ORTHO05D001862 4.0e-09 65.9 201 34.3
SalBow7G1468 Salvia bowleyana HOM05D001896 ORTHO05D001862 4.0e-09 65.9 183 33.9
Aqoxy6G02538 Aquilegia oxysepala HOM05D001896 ORTHO05D001862 5.3e-09 65.5 184 32.6
AL1G20830 Arabidopsis lyrata HOM05D001896 ORTHO05D001862 5.3e-09 65.5 197 29.4
BraA09t37458Z Brassica rapa HOM05D001896 ORTHO05D001862 6.9e-09 65.1 193 32.1
MD08G1080000 Malus domestica HOM05D001896 ORTHO05D001862 6.9e-09 65.1 180 33.3
Rhsim08G0092500 Rhododendron simsii HOM05D001896 ORTHO05D001862 9.0e-09 64.7 193 34.2
SGA_v2.0_scaffold152G36823 Striga asiatica HOM05D001896 ORTHO05D001862 9.0e-09 64.7 191 30.4
Cpa.g.c26343.5 Carica papaya HOM05D001896 ORTHO05D001862 1.2e-08 64.3 194 32.0
Lalb_Chr23g0267571 Lupinus albus HOM05D001896 ORTHO05D001862 1.2e-08 64.3 184 32.1
Nitab4.5_0010576g0010 Nicotiana tabacum HOM05D001896 ORTHO05D001862 1.2e-08 64.3 184 30.4
Oeu039850.1 Olea europaea HOM05D001896 ORTHO05D001862 1.2e-08 64.3 184 33.2
Solyc02g092190.1 Solanum lycopersicum HOM05D001896 ORTHO05D001862 1.2e-08 64.3 191 34.0
Sopen02g036760 Solanum pennellii HOM05D001896 ORTHO05D001862 1.2e-08 64.3 191 34.0
TAR381G1204 Trochodendron aralioides HOM05D001896 ORTHO05D001862 1.2e-08 64.3 193 32.1
Aqoxy6G02540 Aquilegia oxysepala HOM05D001896 ORTHO05D001862 1.5e-08 63.9 189 30.2
AL2G17800 Arabidopsis lyrata HOM05D001896 ORTHO05D001862 1.5e-08 63.9 206 35.0
BcaC04g22156 Brassica carinata HOM05D001896 ORTHO05D001862 1.5e-08 63.9 193 32.1
A09p18270 Brassica napus HOM05D001896 ORTHO05D001862 1.5e-08 63.9 193 32.1
C09p22750 Brassica napus HOM05D001896 ORTHO05D001862 1.5e-08 63.9 193 32.1
BolC9t55192H Brassica oleracea HOM05D001896 ORTHO05D001862 1.5e-08 63.9 193 32.1
Gorai.003G031600 Gossypium raimondii HOM05D001896 ORTHO05D001862 1.5e-08 63.9 187 31.0
C09p22770 Brassica napus HOM05D001896 ORTHO05D001862 2.0e-08 63.5 191 31.4
BolC9t55194H Brassica oleracea HOM05D001896 ORTHO05D001862 2.0e-08 63.5 191 31.4
Ca_13199_v3 Cicer arietinum L. HOM05D001896 ORTHO05D001862 2.0e-08 63.5 188 30.9
Migut.C00402 Erythranthe guttata HOM05D001896 ORTHO05D001862 2.0e-08 63.5 193 32.6
AT1G58420 Arabidopsis thaliana HOM05D001896 ORTHO05D001862 2.6e-08 63.2 206 33.0
MD15G1067000 Malus domestica HOM05D001896 ORTHO05D001862 2.6e-08 63.2 180 32.8
CAN.G1075.50 Capsicum annuum HOM05D001896 ORTHO05D001862 3.4e-08 62.8 196 31.1
BcaB08g37333 Brassica carinata HOM05D001896 ORTHO05D001862 5.8e-08 62.0 183 26.8
CARHR010240 Cardamine hirsuta HOM05D001896 ORTHO05D001862 7.6e-08 61.6 187 29.4
Ciclev10002716m.g Citrus clementina HOM05D001896 ORTHO05D001862 7.6e-08 61.6 189 32.3
Lj7P110T16 Lonicera japonica HOM05D001896 ORTHO05D001862 7.6e-08 61.6 189 31.2
Ca_29874_v3 Cicer arietinum L. HOM05D001896 ORTHO05D001862 1.0e-07 61.2 190 31.1
Glyma.05G107000 Glycine max HOM05D001896 ORTHO05D001862 1.0e-07 61.2 184 31.5
Gohir.D11G209900 Gossypium hirsutum HOM05D001896 ORTHO05D001862 1.0e-07 61.2 181 33.1
Gorai.007G225100 Gossypium raimondii HOM05D001896 ORTHO05D001862 1.0e-07 61.2 181 33.1
Nitab4.5_0002796g0030 Nicotiana tabacum HOM05D001896 ORTHO05D001862 1.0e-07 61.2 134 35.8
Oeu013335.1 Olea europaea HOM05D001896 ORTHO05D001862 1.0e-07 61.2 189 30.7
RcHm_v2.0_Chr2g0108431 Rosa chinensis HOM05D001896 ORTHO05D001862 1.0e-07 61.2 181 33.1
AT1G10140 Arabidopsis thaliana HOM05D001896 ORTHO05D001862 1.3e-07 60.8 202 28.2
Sp2g05170 Schrenkiella parvula HOM05D001896 ORTHO05D001862 1.3e-07 60.8 195 29.7
PGSC0003DMG400021411 Solanum tuberosum HOM05D001896 ORTHO05D001862 1.3e-07 60.8 190 31.6
Potri.007G006100 Populus trichocarpa HOM05D001896 ORTHO05D001862 1.7e-07 60.5 183 30.6
PGR083G2885 Punica granatum HOM05D001896 ORTHO05D001862 1.7e-07 60.5 187 31.0
Aa31LG1G4750 Aethionema arabicum HOM05D001896 ORTHO05D001862 2.2e-07 60.1 189 31.2
Nitab4.5_0004633g0010 Nicotiana tabacum HOM05D001896 ORTHO05D001862 2.2e-07 60.1 179 31.3
AUR62034996 Chenopodium quinoa HOM05D001896 ORTHO05D001862 2.9e-07 59.7 185 34.1
Dinv26948 Davidia involucrata HOM05D001896 ORTHO05D001862 2.9e-07 59.7 178 32.0
Gohir.A11G213300 Gossypium hirsutum HOM05D001896 ORTHO05D001862 3.8e-07 59.3 182 35.2
Peaxi162Scf00340g00021 Petunia axillaris HOM05D001896 ORTHO05D001862 3.8e-07 59.3 127 36.2
Solyc04g077620.1 Solanum lycopersicum HOM05D001896 ORTHO05D001862 3.8e-07 59.3 132 31.1
BcaB08g37335 Brassica carinata HOM05D001896 ORTHO05D001862 4.9e-07 58.9 183 27.3
CANSAT01G1870 Cannabis sativa HOM05D001896 ORTHO05D001862 4.9e-07 58.9 182 30.2
CARHR283980 Cardamine hirsuta HOM05D001896 ORTHO05D001862 4.9e-07 58.9 199 29.6
FAN23G2360 Fragaria x ananassa HOM05D001896 ORTHO05D001862 6.5e-07 58.5 185 32.4
QL11p029532 Quercus lobata HOM05D001896 ORTHO05D001862 6.5e-07 58.5 192 30.2
Cfa004148 Carpinus fangiana HOM05D001896 ORTHO05D001862 8.4e-07 58.2 192 32.8
FAN26G2644 Fragaria x ananassa HOM05D001896 ORTHO05D001862 8.4e-07 58.2 185 32.4
Glyma.17G159800 Glycine max HOM05D001896 ORTHO05D001862 8.4e-07 58.2 192 29.2
FvH4_1g17980 Fragaria vesca HOM05D001896 ORTHO05D001862 1.1e-06 57.8 185 31.9
FAN19G1457 Fragaria x ananassa HOM05D001896 ORTHO05D001862 1.4e-06 57.4 185 31.9
Potri.002G117100 Populus trichocarpa HOM05D001896 ORTHO05D001862 1.4e-06 57.4 183 32.8
Eucgr.F00091 Eucalyptus grandis HOM05D001896 ORTHO05D001862 1.9e-06 57.0 185 33.0
Lalb_Chr22g0355731 Lupinus albus HOM05D001896 ORTHO05D001862 1.9e-06 57.0 195 29.7
Glyma.14G089054 Glycine max HOM05D001896 ORTHO05D001862 2.5e-06 56.6 191 31.9
Oeu021445.1 Olea europaea HOM05D001896 ORTHO05D001862 2.5e-06 56.6 190 32.6
PGR004G2665 Punica granatum HOM05D001896 ORTHO05D001862 2.5e-06 56.6 185 31.9
BcaC04g22153 Brassica carinata HOM05D001896 ORTHO05D001862 3.2e-06 56.2 184 31.5
MD02G1188200 Malus domestica HOM05D001896 ORTHO05D001862 3.2e-06 56.2 183 30.6
PGR031G2497 Punica granatum HOM05D001896 ORTHO05D001862 3.2e-06 56.2 186 32.3
Lsat_1_v5_gn_9_79900 Lactuca sativa HOM05D001896 ORTHO05D029284 4.2e-06 55.8 159 31.4
Actinidia10212 Actinidia chinensis HOM05D001896 ORTHO05D001862 5.5e-06 55.5 137 35.0
BolC8t48972H Brassica oleracea HOM05D001896 ORTHO05D001862 5.5e-06 55.5 189 31.7
Haze_15187 Corylus avellana HOM05D001896 ORTHO05D001862 5.5e-06 55.5 186 32.3
Ah.15g097370 Amaranthus hybridus HOM05D001896 ORTHO05D001862 7.1e-06 55.1 184 31.5
PSO017G0117 Papaver somniferum HOM05D001896 ORTHO05D001862 7.1e-06 55.1 182 30.2


User provided reference genes

Program Settings